LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr7g1798	ATGAAACGCCGTTTTCTTGACACAGAAATGAGCATGCCACCATCATACGAAAACAACACAAGCGACTCATTCATCAACGTCGAAAATTTCGACACAAACATGGTGATAATATTAGCAGCACTATTATGTGCATTGATATGCGCTCTAGGGCTAAACACCATAGCTCGTTGCGCCATGCGGTGCAGCCGAAGATTATCCGAAGAGACACCGGAACAAGCCACGGTAAGGCTAAACAAAACAGGTCTGAAAAAGCGTGAGCTGAGTCAAATTCCGGTGACTGTGTACGGTGGTGCCGGAGAGGATATTCCAGTGACGGAGTGTCCTATTTGTTTAGGAGAGTTTGAGAAAGGGGACAAAGTTCGAATGTTGCCAAAGTGTAATCACGGGTTTCATGTTAGGTGTATTGACACGTGGTTGGTGTCACATTCTTCGTGTCCAAATTGTAGGAATTCACTTCTTGTTGAGGGAGAATCCAAAGATGGGGTTGCCGGAGATGGGTTGCCGGAAAATGTTGCGGCGGTGATAGTTGAGGTGAGTTGA	540	0.4611	MKRRFLDTEMSMPPSYENNTSDSFINVENFDTNMVIILAALLCALICALGLNTIARCAMRCSRRLSEETPEQATVRLNKTGLKKRELSQIPVTVYGGAGEDIPVTECPICLGEFEKGDKVRMLPKCNHGFHVRCIDTWLVSHSSCPNCRNSLLVEGESKDGVAGDGLPENVAAVIVEVS*	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr7g1798	179	Pfam	Ring finger domain	106	149	IPR001841	-
	Mtr7g1798	179	SMART	ring_2	107	148	IPR001841	-
	Mtr7g1798	179	PANTHER	RING-H2 FINGER PROTEIN ATL74	1	159	-	-
	Mtr7g1798	179	SUPERFAMILY	RING/U-box	106	154	-	-
	Mtr7g1798	179	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	81	156	IPR013083	-
	Mtr7g1798	179	ProSiteProfiles	Zinc finger RING-type profile.	107	149	IPR001841	-
	Mtr7g1798	179	PANTHER	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	1	159	-	-
	Mtr7g1798	179	CDD	RING-H2_EL5_like	106	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr7g1798	Mtr-Chr7	34015658	34017267	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr7g1798	4	163	C3H Transcription Factor Family	AT3G10910	54.167	2.80e-56	173

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr7g1798	K19040		-	gmx:100810195	245.743

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr7g1798	7	34015658	34017267	Mtr7g1798	7	34015658	34017267	ECH