Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1763 ATGAAACCATTTTTCATTGATTATGGAATGGCAGATCCTGCTAGTAATGGAGGTCTTGAGCGAGATATTGAACAAGCACTCGTTGTTTTAAAGAAAGGATCTCAGTTAATAAAGTACTGTCGAAAAGCCAAGCCAAAAGTTCGCCCTTTCAGACTCTCCTTGGATGAAACAACACTAATTTGGATTTCTCATAAAAAGGAAAGGACCCTAAAATTATCTTCGGTTTCACGGATTATTCCTGGACAAAGAACTGTTGTCTTTAGAAGATATTTGCAGCCTGAAAAGGATTATCTTTCATTTTCGCTTGTTTATAATAACGGAGAGCGGACACTTGATCTGATATGCAAGGACAAAGCTGAAGCCGAGGTATGGTTTGCAGGGCTTAAGGCATTAATATCCACTGGAAGGCATAGTAGGCTTACTCGAAGTGAATCATCATATGAGGGTGTTGATATTATTCCCAATGGTCGCCCTTTCGGTGCAGTATTAGAGATTTCCACAAGCATTGCTCGTGGTAGGGTCTCTACCGATTCATTGCCTTGTGAGTCTTCATTGTATTTCGCAAACCCAGATGTGGGGTTAGATCGTACAAATATGCAAGGAAGGACTAGTGTTGGAGATGGTTTTCGGATCAGTGTGTCAAGTACACCTAGCGTTTCAAGTTTAGGATCAGGACCTGATGACATTGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCTGATGCAGTTGCACCCGATGGAAATGGCACTCAGTTCCCTTCCACCACAGATGTATTGGTTCCTAAGCCCTTAGAGTCAAGTGTTGTTCTAGATGTTCACCAGATTGCGTCTGGCGTACGTCATATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACATGGGGCGAGGAATCTGGTGGAAGACTAGGTCATGGAATCGATAAAGATTTCGGCCGACCTCAACTTGTTGAGTTTCTAGCAGTTACTAATGTGGAGAGTGTTGCGTGCGGAGAGAATCATACTTGTGCTGTATCTATATCAGATGAACTATTCTCATGGGGTGACGGTAAATATAACGTTGGACTTCTCGGACATGGCACCGATGTTAGCCATTGGGTACCAAAGAGGATTAATGGTCCTCTGGAAGGACTTCAAGTTATATCGATAGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGAACATTTGGTGTATTAGGTCATGGAAATAGAGAAAGTGTGGCATATCCAAAAGAGGTACAATTATTAAGTGGATTGAAGACTATTACGGTTGCATGCGGAGTATGGCATACTGCAGCAATTGTAGAGGTTACTTTTCAATCAGGTTCAAATGTTTCGTCACGAAAGCTCTTCACTTGGGGAGACGGAGACAAATATCGATTAGGACATGGAAACAAGGAAACATACCTTCAACCTACTTGTGTATCAACACTCATTGAATATAATTTCCACCAGATTGCATGTGGACACACTATGACTATCGCTCTCACTACTTCTGGACATCTATTTACTATGGGAGGCACTGAATTTGGTCAACTAGGAAATTCTTTATCTGATGGAAAAATACCTATACTAGTACAAGACGCATTGGTGGGCGAATTTGTCGAGGAAATATCATGTGGAGCTCATCATGTTGCTGCTTTGACATCTAGAAGTGAATTATATACTTGGGGTAAAGGCGCAAATGGAAGATTAGGGCATGGAGATATAGATGATAGAAAATCACCAACATTGGTGGAAGCCTTGAAAGAAAGGCATGTCAAAAACATTTCTTGTGGCTCAAGTTTCACTTCTTGCATATGCATTCATAAATGGGTATCTGGTGTCGATCAATCCACTTGCACCGGTTGCAGACAACCATTCGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGCGGATTAGTGCATTGTCATGGTTGTAGTTCAAGAAAAGTTATGAAAGCAGCATTGGCTCCGACACCAGGAAAGCCTCATCGCGTATGTGATTCTTGCTACACTAAGCTTAAAGCGGTTGAGGCAAATGCGGCTTCGAATCTTAACAGAAAAGTTACTATTACACAACCTCGCAGTTCTATTGATGGAAGGGATAGATATGGCCAAGGAGAAACAGTAAGGTCTACAAAAATTCTTTTTCCTCCTTTCTCAGAACCACTAAAATATCTTGAAATGAGGACTAATAAGCTTGGGAATTCTTCCATGCTACCAACTTCTCAAATTCCATCAATTGCACAAATGAAAGACATGTCATTTCCAAGTTCAACTAGCTCGATTCAAAATGGTTTGAAGTATCCTCTAGCTCCAAATCCGCCTTCAACTCCACCTCTCAATGCGAGATCAGTATCCCCATATGCAAGAAGACCAAGCCCGCCACGTTCTAGCAGTCCAGGATTTTCAAGAAGTATTATTGATAGTATGAAGAAGACAAATGAGCTTTTGAACCAACAAGTCTCAAAATTGCAGAACCAAAATCGAAGTTTGAAGCAGAAAAGTACCATGGAAATTCAGAAACTACATAAAAACATTAAGGATGCCACCTCATTGGCAGCAGAAGAATCTTCTAAACATAAAGCTACCAAAGAATATTTTGGTTCCATGATAGCTCAGTTGAAGGAAATGGCTGAGCAATTGCCACCAGAAGTTTTAGAGGGTGAAAAATTTAGAAACATGGTTATTCATGCTGAGAATTTTCTAGAGGAAAATCCAAAATATGAAACATGTTCGGTAGCATCAAACTTAGAATCTGAGCAACAAAGCGAACCTGTTTCAAACAATGGTAAACTTAAAGGAAAAATAATAGAAGAAAATAATAATGAAGCTGCAGAAGTTAATCCATCTCAAGATGTAGGAAATGTCTTTCAAGAAAACAATGGATCATCTTCATCTAATACTGAAGCAAGAGTGGCATCACAAAGCTCTGAAAATGATTCAAGAACATTAAACCCTTCAAGATCAGTGAGAGAAGGAAACACACAAGTCGTCGACCAATTTGAACCAGGCGTTTATGTTACACTAATAGTAAGGCCTGATGGTAAAAGACTATTCAAAAGTGTTAAATTCAGTAAACGAAAGTTTCGTGAACATCAAGCAGAAGAATGGTGGACCTTAAACAAAGATAGGGTGCATGCGAGATATAGTCCACAAGCGACAAATCCTGAAAATGTAGCGTCATCTAGCAGAACGCCACCACCTGCAAATCAAGAAGATGTTGCATCATCTAGCAGTAACCCACCACCTGCAAATCAAGAAGATGTAGCATCATCTAGCAGTAACCCGCCGCCAGCTGAAGAAAACAATGAGGCCACACCTCCCTAA 3354 0.4034 MKPFFIDYGMADPASNGGLERDIEQALVVLKKGSQLIKYCRKAKPKVRPFRLSLDETTLIWISHKKERTLKLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISTGRHSRLTRSESSYEGVDIIPNGRPFGAVLEISTSIARGRVSTDSLPCESSLYFANPDVGLDRTNMQGRTSVGDGFRISVSSTPSVSSLGSGPDDIESLGDVYIWGEVWADAVAPDGNGTQFPSTTDVLVPKPLESSVVLDVHQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEFLAVTNVESVACGENHTCAVSISDELFSWGDGKYNVGLLGHGTDVSHWVPKRINGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVAYPKEVQLLSGLKTITVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTMGGTEFGQLGNSLSDGKIPILVQDALVGEFVEEISCGAHHVAALTSRSELYTWGKGANGRLGHGDIDDRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSTCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYTKLKAVEANAASNLNRKVTITQPRSSIDGRDRYGQGETVRSTKILFPPFSEPLKYLEMRTNKLGNSSMLPTSQIPSIAQMKDMSFPSSTSSIQNGLKYPLAPNPPSTPPLNARSVSPYARRPSPPRSSSPGFSRSIIDSMKKTNELLNQQVSKLQNQNRSLKQKSTMEIQKLHKNIKDATSLAAEESSKHKATKEYFGSMIAQLKEMAEQLPPEVLEGEKFRNMVIHAENFLEENPKYETCSVASNLESEQQSEPVSNNGKLKGKIIEENNNEAAEVNPSQDVGNVFQENNGSSSSNTEARVASQSSENDSRTLNPSRSVREGNTQVVDQFEPGVYVTLIVRPDGKRLFKSVKFSKRKFREHQAEEWWTLNKDRVHARYSPQATNPENVASSSRTPPPANQEDVASSSSNPPPANQEDVASSSSNPPPAEENNEATPP* 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1763 1117 PRINTS Chromosome condensation regulator RCC1 signature 210 226 IPR000408 -
Mtr7g1763 1117 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Mtr7g1763 1117 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Mtr7g1763 1117 PRINTS Chromosome condensation regulator RCC1 signature 401 415 IPR000408 -
Mtr7g1763 1117 PRINTS Chromosome condensation regulator RCC1 signature 502 520 IPR000408 -
Mtr7g1763 1117 PRINTS Chromosome condensation regulator RCC1 signature 560 581 IPR000408 -
Mtr7g1763 1117 Coils Coil 816 843 - -
Mtr7g1763 1117 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 1067 - -
Mtr7g1763 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 461 512 IPR000408 -
Mtr7g1763 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 292 343 IPR000408 -
Mtr7g1763 1117 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 621 683 IPR017455 -
Mtr7g1763 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 399 450 IPR000408 -
Mtr7g1763 1117 ProSiteProfiles BRX domain profile. 1004 1059 IPR013591 -
Mtr7g1763 1117 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 22 1067 - -
Mtr7g1763 1117 MobiDBLite consensus disorder prediction 953 1005 - -
Mtr7g1763 1117 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 437 447 IPR000408 -
Mtr7g1763 1117 Gene3D - 457 630 IPR009091 -
Mtr7g1763 1117 Gene3D - 218 456 IPR009091 -
Mtr7g1763 1117 Pfam Transcription factor BRX N-terminal domain 864 898 IPR027988 -
Mtr7g1763 1117 SMART fyve_4 615 684 IPR000306 GO:0046872
Mtr7g1763 1117 SUPERFAMILY FYVE/PHD zinc finger 617 686 IPR011011 -
Mtr7g1763 1117 MobiDBLite consensus disorder prediction 1057 1117 - -
Mtr7g1763 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 565 616 IPR000408 -
Mtr7g1763 1117 CDD FYVE_like_SF 626 679 - -
Mtr7g1763 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 513 564 IPR000408 -
Mtr7g1763 1117 MobiDBLite consensus disorder prediction 1060 1109 - -
Mtr7g1763 1117 Pfam FYVE zinc finger 617 683 IPR000306 GO:0046872
Mtr7g1763 1117 SUPERFAMILY PH domain-like 22 132 - -
Mtr7g1763 1117 Pfam Transcription factor regulating root and shoot growth via Pin3 1004 1058 IPR013591 -
Mtr7g1763 1117 Pfam Pleckstrin homology domain 24 132 IPR001849 -
Mtr7g1763 1117 MobiDBLite consensus disorder prediction 763 814 - -
Mtr7g1763 1117 SUPERFAMILY RCC1/BLIP-II 232 618 IPR009091 -
Mtr7g1763 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 512 561 IPR000408 -
Mtr7g1763 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 398 447 IPR000408 -
Mtr7g1763 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 566 613 IPR000408 -
Mtr7g1763 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 292 340 IPR000408 -
Mtr7g1763 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 463 509 IPR000408 -
Mtr7g1763 1117 Pfam Regulator of chromosome condensation (RCC1) repeat 344 394 IPR000408 -
Mtr7g1763 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 689 IPR013083 -
Mtr7g1763 1117 Gene3D - 20 139 IPR011993 -
Mtr7g1763 1117 CDD PH_PLC_plant-like 21 133 - -
Mtr7g1763 1117 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 344 398 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1763 Mtr-Chr7 33615101 33622042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1763 1001 1074 Major Intrinsic Protein MIP AT1G31880 31.081 9.91e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1763 - - gmx:100779684 1531.54