LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr7g1698	ATGGCAAGAGGTTTGAAGAAACATTTGAAGCGGCTCAATGCTCCAAAACATTGGATGCTTGATAAGCTTGGTGGTGCCTTTGCCCCAAAGCCGTCATCTGGACCACACAAATCTAGGGAGTGCCTTCCTTTGATCCTTATCTTGAGGAACAGACTAAAATATGCTCTCACATATAGAGAAGTAATTGCCATCTTGATGCAGCGCCATGTTCTAGTTGATGGCAAAGTTAGGACAGACAAGACATATCCTGCTGGTTTTATGGATGTCGTATCTATTCCCAAGACCAATGAAAACTTCCGTCTTCTCTATGACACAAAAGGTCGATTCCGTCTCCACTCTGTAAGGGATGATGAAGCAAAGTTTAAGCTTTGCAAGGTACGATCTGTTCAGTTTGGTCAGAAAGGGATACCCTATCTGAACACCTATGATGGGCGTACAATCCGCTATCCTGATCCCCTTATTAAGGCCAATGACACAATCAAACTAGACTTGGAACAGAACAAGATAACCGATTTCATCAAATTTGATGTGGGGAATGTTGTTATGGTGACTGGAGGAAGGAACAGAGGTCGTGTTGGTTTCATCAAGAACAGAAAGAAACACATGGGCACTTTTGAGACGATTCATGTCCAGGATGCTGCTGGTCATGAGTTTGCAACCCGATTGGGTAATGTCTTCACCATTGGCAGAGGGCCGAAACCTTGGGTGTCTCTTCCCAAAGGCAGAGGTATCAAATTGACCGTCATTGAGGAGGCTAGGAAGCGGATGGCTGCTTCTCAACAGGCTGCAGCTGCTTAA	798	0.4499	MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNRKKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAASQQAAAA*	266

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr7g1698	265	Pfam	RS4NT (NUC023) domain	3	39	IPR013843	-
	Mtr7g1698	265	CDD	KOW_RPS4	175	229	IPR041982	-
	Mtr7g1698	265	Pfam	S4 domain	47	90	IPR002942	GO:0003723
	Mtr7g1698	265	Gene3D	-	122	172	IPR038237	-
	Mtr7g1698	265	Hamap	30S ribosomal protein S4e [rps4e].	7	238	IPR000876	GO:0003735\|GO:0005840\|GO:0006412
	Mtr7g1698	265	ProSitePatterns	Ribosomal protein S4e signature.	8	22	IPR018199	-
	Mtr7g1698	265	PANTHER	30S/40S RIBOSOMAL PROTEIN S4	2	220	IPR000876	GO:0003735\|GO:0005840\|GO:0006412
	Mtr7g1698	265	PANTHER	30S/40S RIBOSOMAL PROTEIN S4	221	265	IPR000876	GO:0003735\|GO:0005840\|GO:0006412
	Mtr7g1698	265	Pfam	Ribosomal family S4e	95	169	IPR013845	-
	Mtr7g1698	265	Gene3D	-	175	245	IPR014722	-
	Mtr7g1698	265	PANTHER	40S RIBOSOMAL PROTEIN S4	2	220	-	-
	Mtr7g1698	265	PANTHER	40S RIBOSOMAL PROTEIN S4	221	265	-	-
	Mtr7g1698	265	SMART	s4_6	42	106	IPR002942	GO:0003723
	Mtr7g1698	265	CDD	S4	51	112	-	-
	Mtr7g1698	265	Gene3D	-	1	117	IPR036986	GO:0003723
	Mtr7g1698	265	Pfam	40S ribosomal protein S4 C-terminus	212	258	IPR032277	-
	Mtr7g1698	265	ProSiteProfiles	S4 RNA-binding domain profile.	42	104	-	-
	Mtr7g1698	265	PIRSF	RPS4a_RPS4e	1	241	IPR000876	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr7g1698	Mtr-Chr7	32560509	32563470	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr7g1698	1	263	Cytoplasmic Ribosomal Protein Gene Family	AT5G58420	89.734	0.0	500

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr7g1698	K02987		-	rcu:8276853	499.204

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr7g1698	7	32560509	32563470	Mtr7g1698	7	32560509	32563470	ECH