Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1650 ATGGAAATGGCTTCTAGCCCTCGTACCGTTGAAGAGATCTTCAAAGATTACAGCGCTCGTAGAATCGCAGTTGTTCGTGCTCTCACTCAAGATGTTGATGAATTTTACGGTCTCTGTGATCCAGATAAGGATAATTTGTGCCTCTATGGTCATAATAATGAAAGCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCGCCGGAACTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTCGAGACGGCATGAACCGTAGGGATTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCCTTCTATCTCGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAACGAACTTCCTACTGTTTTCGAAATCGTGACCGACAGGAAACCAATTAAGGACAACAAGCCAGCAGCAGACAGCGGAAGTAAATCCCGAGGAAGCACCAAGAGATCCAGTGACGGGCAAGTCAAAAGCAACCCAAAGTTTCCTGTGGATGATGGTTATGAGGAGGAGGAGGAAGACGAGCACAGTGAAACACTTTGCGGGAGCTGTGGCGGTAATTACAATGCCGACGAGTTTTGGATTGGTTGTGATATATGTGAGAGGTGGTACCATGGGAAATGTGTGAAGATCACTCCTGCGAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAATGCAGCATCAGGCGGAACAGACCCTAG 729 0.4746 MEMASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDDGYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1650 242 CDD PHD_AL_plant 188 238 IPR044104 -
Mtr7g1650 242 MobiDBLite consensus disorder prediction 140 177 - -
Mtr7g1650 242 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Mtr7g1650 242 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
Mtr7g1650 242 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 241 - -
Mtr7g1650 242 PANTHER CPG BINDING PROTEIN 3 241 IPR045104 GO:0006355|GO:0042393
Mtr7g1650 242 Pfam PHD-finger 189 236 IPR019787 -
Mtr7g1650 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 236 IPR013083 -
Mtr7g1650 242 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Mtr7g1650 242 SUPERFAMILY FYVE/PHD zinc finger 178 240 IPR011011 -
Mtr7g1650 242 SMART PHD_3 188 236 IPR001965 -
Mtr7g1650 242 MobiDBLite consensus disorder prediction 148 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1650 Mtr-Chr7 31950404 31953597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1650 4 241 Alfin-like Transcription Factor Family AT5G05610 73.950 2.34e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mtr7g1650 Alfin 1.5e-66 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1650 7 31950404 31953597 Mtr7g1650 7 31950404 31953597 ECH
Mtr7g1650 7 31950404 31953597 Mtr4g0419 4 5054920 5058542 PCT