Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1547 ATGTCAAATTTACAAATGGCCCATGTTGATTTAGAGCAAGAAAATCATCTTCATCGCCATCATCATCATCATGGAAGTGATGTGAGTGGTGAAGGAAGTGTATGTTTCTCTGATGCAGACGATGGTGGTTCAAGCTATTCTCATTTCTATTCAACAAATGGTGGTTCAAGCTATGATGATTACACTTTTGCTTGTGTTTCTGATCCTGAACTTGGTTGTGTTCATGATTCTAGAAGAGTTTCTTCTGTTTCTGATTGTTCTGTTGAGGTTGAAATTAGAATTGAGAGGGTTCCTGAGAATAAGGTGCATTTGGCTAAAGTGGAGAAAGATTGTAGGATTTGTCATATGGGTTTGGAGAGTGAAAGCCATGAATCTGGTCCTCCAATTGAATTGGGCTGTTCTTGTAAAGAGGATTTAGCTGCTGCTCATAAGAATTGTGCCGAGGCTTGGTTCAAGATTAAGGGAAATAGGACGTGCGAAATTTGTCATTCGATTGCGCGGAACGTTTACAGTCCAAATGAGGATTTAACAGAGCATGTGAGCGAGAATAACAATGCGACTGCATCATCCACACTCTCAACGGCCGTTCCTACAGCAGAAACTCAAAGATTTTGGCATGGCCATCGCTTCTTGAATTTTCTGCTTGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCATCTTAG 708 0.404 MSNLQMAHVDLEQENHLHRHHHHHGSDVSGEGSVCFSDADDGGSSYSHFYSTNGGSSYDDYTFACVSDPELGCVHDSRRVSSVSDCSVEVEIRIERVPENKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSIARNVYSPNEDLTEHVSENNNATASSTLSTAVPTAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1547 235 SUPERFAMILY RING/U-box 108 165 - -
Mtr7g1547 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 171 IPR013083 -
Mtr7g1547 235 PANTHER OS01G0850200 PROTEIN 5 234 - -
Mtr7g1547 235 SMART ringv_2 110 163 IPR011016 GO:0008270
Mtr7g1547 235 Pfam RING-variant domain 111 162 IPR011016 GO:0008270
Mtr7g1547 235 CDD RING_CH-C4HC3_MARCH 111 163 - -
Mtr7g1547 235 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Mtr7g1547 235 PANTHER ZINC FINGER, RING-CH-TYPE 5 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1547 Mtr-Chr7 30689131 30693039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1547 74 235 C3H Transcription Factor Family AT5G05830 60.123 1.39e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1547 - - gmx:100808666 344.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1547 7 30689131 30693039 Mtr3g2118 3 34712602 34715779 ECH
Mtr7g1547 7 30689131 30693039 Mtr5g2770 5 36130146 36132778 ECH
Mtr7g1547 7 30689131 30693039 Mtr7g1547 7 30689131 30693039 ECH