Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1478 ATGTCAGAAATACTACGATTTGGTGATGTGACAAGAGATGACAAAAAGCTAAAGCGTAAGATGGATGATGCTATTGTTGCTGATTCAGAGACATTGATGTCTCTGAGTTTAGGAGGAGGGAGAAGTGGAGGATCTTCATCCAAATCCCTCAAGATCCATGAGAAGTTGAGGGAATACCCATGTAAGTTTTGCGATAAGAAGTTTTCAAGTTCTCAAGCCTTGGGAGGACATCAAGGTGCCCATAAGCGTGAAAGAGTGCTTGCGAGAATTGAAAAAGAAATTCAATTAGGAACTTTTAGACTTGGGGATCATCATTTCTGTCCATATTCAATTGGTCACCCATATCCCTTCACTATTGCAGGGTCATCACCTATTTATCATGGACTTGGGTGGCCTCAACTTGTTGCTCATGCAAGCTATGGCAACCCATTTGAGATGATCAATAACTATGATTGGGCTACTCAAACTCCACTAAATAATAATGTGGGATTTGAAAATCATGACCTTAATAATCAGCAGCTGCAGGTTCCTTCATTTGGTGTTCCTCTTAACAATCATGTCCAAGAGGGAAATAACAATCATGATGACCCAACTAGCCACCAAATTTCAACCCCATTCCCTGATTTATCACTTAAACTTTAG 642 0.4019 MSEILRFGDVTRDDKKLKRKMDDAIVADSETLMSLSLGGGRSGGSSSKSLKIHEKLREYPCKFCDKKFSSSQALGGHQGAHKRERVLARIEKEIQLGTFRLGDHHFCPYSIGHPYPFTIAGSSPIYHGLGWPQLVAHASYGNPFEMINNYDWATQTPLNNNVGFENHDLNNQQLQVPSFGVPLNNHVQEGNNNHDDPTSHQISTPFPDLSLKL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1478 213 PANTHER ZINC FINGER PROTEIN JAGGED 1 204 IPR045320 GO:0003700
Mtr7g1478 213 MobiDBLite consensus disorder prediction 185 206 - -
Mtr7g1478 213 Gene3D Classic Zinc Finger 45 98 - -
Mtr7g1478 213 MobiDBLite consensus disorder prediction 185 213 - -
Mtr7g1478 213 Pfam C2H2-type zinc finger 59 83 - -
Mtr7g1478 213 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Mtr7g1478 213 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 204 - -
Mtr7g1478 213 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Mtr7g1478 213 SUPERFAMILY beta-beta-alpha zinc fingers 57 86 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1478 Mtr-Chr7 29668736 29669377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1478 33 151 C2H2 Transcription Factor Family AT1G24625 37.903 1.99e-14 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g1478 zf-C2H2_6 1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1478 - - mtr:MTR_2g067740 266.544