Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1359 ATGGCGGAACCTAAGGGTTTCACCGTTCATCTCCACAACCTTATCGACATTGCCGCCGAAATCTCTCAAATCTCCACCTTCAATCCCTTAATCAAAACCCAATCCTTTGATCTCAGCCGTAGAATCAATTTCCTTCTTCCTCTCTTTCATCACCTCCTTAACGACGTCGTTTTTGTTCCCTCTGAAACCCTAGTTTCGCTTCAACATGCTTTTCTCTCTGCTAAGGAATTGCTTCTCTTTTGCTCGCAATCGAGTCAGCTTTATATGATATTGGAGAGGGAGAAAATTAAGTGCAAATTCAGTGATCTCGCCTCTCAATTTGAACAAGCTATAAGTGGGGTTTCATGTGATAAACTTGATATTTCTGAGGAGCTCAAGGAGCAGGTTGCACTTGTACTTTCTCAGTTTAGAAGGGCCAAAGAGCATTTTGATCCACCTGGTCTTGAGCTTTATGAGCATCTGTTGTCTATCTATAACCAGAGCTGTGATGTGAATACTGAACTAGCTGCCCTACGCTTAATCTGTGAAAAGCTAAAATATGTGAGTGTGGAAGATATCAAACAAGAGTCACTGGCTCTACATAAGATGATTGTTGATGAGGGTGGTTGTTATGAGAAAAGTGCGCAGAGGTTGTCAATGGTGCTGAAAAAAATTGAAGAGTTTTTGTTGAAGGAATCTGAAAACAATGGAGGTGGTTGTTTTGAGAAAAGCACACAGGTTTTGTTGAGTGGAGATTTGCCTCCTCATACTGACGAGACATGTGTGAAATCAGGTTGTCAGTCACCGGTTGTGCCAGAGGAGTTTCGCTGCCCAATATCTCTTGACCTAATGAAAGATCCTGTTATCATTTCCACAGGGCAGACATATGAACGAGCTTGCATAAAGAAATGGCTTGATGCAGGGCATCGAACATGTCCCATCACTCAGCAGATTCTTTCCAGCTCCATCCTCATACCTAACCATGCTTTATACAGCCTGATTTCAAATTGGTGCGAGGCAAATGGAGTGGAACCACCCAGAAGGGTAGGAAACTTCTGGCTCTGTAAGGAAACATCAGACGGCTATTCTGAATTGATAAATCTTGATACCTTAATGAGGAAACTTACTTGCAGTAATGTTGAGGATCAGCGTAATGCAGCAGGGGAGCTCCGTCTTCTTGCCAAACACAACAGTCAAAATCGAAAGTTGATTGGTGAAGCTGGTGCTATACCCCTCCTTGTTGTTCTCCTCTATGTGCCTGATGCTATCACCCAGGAGCAAGCTGTTACTGCTCTTCTCAATCTATCTATCTGCGATGAAAATAAAGAGCGCATCATGGCTTCTGAGGCTTTGCCAGGAATCCTTCATGTGCTAAAAAATGGCTGTATGGCAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCTGCTGCGGATCAGAACAAAGTGGCAATTGGTGCATCTGGAGCAATCGAGGCACTAGTTACTCTCTTCTGCGAAGGAAGTCAAAGAGGAAAAGTTGATGCTGCAACAGCACTTTTCAAACTCTGTTTATACCATGGGAACAAAGGCCGTGTTATTAGGGCCGGTATTGTGCCCAAGTTGATTGAAATGTTAATGGCGGGGGAGATGAGGGATGAGGCATTGGCAATCATGGATATAATAGTTAGCCACCCTGATGGAAAAGCTGCAATTGTATCTACCAATGCTATTTCCACTTTGGTGGAATTAATCATTAATGGATCTTCTAAGAACAAAGAGAATGCAACTTCAGTGCTTGTGCACCTCTGTAGGGGAAACTCACTACACCGATCGACCGTCACTTCACCCGGAGTGATCAATCCTCTCTTGGAACTGGCAAAAAACGGCTCAGAAAGGGGTAAGCGAAAAGCTGCACAACTTCTTGAGCTGTTGGACATTTAG 1905 0.4378 MAEPKGFTVHLHNLIDIAAEISQISTFNPLIKTQSFDLSRRINFLLPLFHHLLNDVVFVPSETLVSLQHAFLSAKELLLFCSQSSQLYMILEREKIKCKFSDLASQFEQAISGVSCDKLDISEELKEQVALVLSQFRRAKEHFDPPGLELYEHLLSIYNQSCDVNTELAALRLICEKLKYVSVEDIKQESLALHKMIVDEGGCYEKSAQRLSMVLKKIEEFLLKESENNGGGCFEKSTQVLLSGDLPPHTDETCVKSGCQSPVVPEEFRCPISLDLMKDPVIISTGQTYERACIKKWLDAGHRTCPITQQILSSSILIPNHALYSLISNWCEANGVEPPRRVGNFWLCKETSDGYSELINLDTLMRKLTCSNVEDQRNAAGELRLLAKHNSQNRKLIGEAGAIPLLVVLLYVPDAITQEQAVTALLNLSICDENKERIMASEALPGILHVLKNGCMAARENAAATFFSLSAADQNKVAIGASGAIEALVTLFCEGSQRGKVDAATALFKLCLYHGNKGRVIRAGIVPKLIEMLMAGEMRDEALAIMDIIVSHPDGKAAIVSTNAISTLVELIINGSSKNKENATSVLVHLCRGNSLHRSTVTSPGVINPLLELAKNGSERGKRKAAQLLELLDI* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1359 634 Gene3D - 10 117 IPR036537 GO:0007166
Mtr7g1359 634 Gene3D - 501 633 IPR011989 -
Mtr7g1359 634 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Mtr7g1359 634 ProSiteProfiles U-box domain profile. 263 337 IPR003613 GO:0004842|GO:0016567
Mtr7g1359 634 Pfam U-box domain 264 334 IPR003613 GO:0004842|GO:0016567
Mtr7g1359 634 SMART arm_5 594 634 IPR000225 GO:0005515
Mtr7g1359 634 SMART arm_5 431 471 IPR000225 GO:0005515
Mtr7g1359 634 SMART arm_5 390 430 IPR000225 GO:0005515
Mtr7g1359 634 SMART arm_5 513 551 IPR000225 GO:0005515
Mtr7g1359 634 SMART arm_5 552 592 IPR000225 GO:0005515
Mtr7g1359 634 SMART arm_5 472 512 IPR000225 GO:0005515
Mtr7g1359 634 Gene3D - 346 500 IPR011989 -
Mtr7g1359 634 PANTHER U BOX DOMAIN-CONTAINING 8 632 - -
Mtr7g1359 634 SMART Ubox_2 267 330 IPR003613 GO:0004842|GO:0016567
Mtr7g1359 634 CDD RING-Ubox_PUB 268 310 IPR045210 -
Mtr7g1359 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Mtr7g1359 634 SUPERFAMILY ARM repeat 357 632 IPR016024 -
Mtr7g1359 634 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 632 - -
Mtr7g1359 634 SUPERFAMILY RING/U-box 264 339 - -
Mtr7g1359 634 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1359 Mtr-Chr7 28003154 28009252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1359 12 630 U-box Gene Family AT3G46510 48.640 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1359 - - var:108326899 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1359 7 28003154 28009252 Mtr7g1359 7 28003154 28009252 ECH