Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1351 ATGGAGTTACGGTTTTCATCACACTTCATTTTCACCATTCTCGCTATCACGCTTCTTTTTGCTTTCACCAATGCTATTGATTCTAATGAATCACGTGTTGTGAATGGAGAAGAGAAGTTGAAGATGCAGAGCTTGAATAATTCATCAATGGCGGAAAGCTTAAGTCATGATGCTATCAACGAGCATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATACGACTATACGCAATCACACGGAGAGAAGGAGTCTGAGTTTTTTCTCATGTGGGACTGGAAATCCAATGGATGACTGCTGGCGCTGTGACAAGCTTTGGTACCGCCGCCGAAAGCGGTTGGCTGATTGTGCCATTGGCTTTGGTCGCAATGCTATTGGTGGCCGCGACGGAAGGTACTACGTTGTGAATAACCCAAGAGATGACGACCCTGTGAACCCAAGACCTGGCACTCTCCGTCACGCCGTCATTCAAGATAGGCCATTGTGGATTGTGTTCAAGAGAGACATGGTGATCACCCTGAAGCAAGAATTGATCATGAACAGTTTTAAGACCATAGATGGTCGTGGTGCCAATGTTCATATTGCCTTTGGAGCATGCATTACTATTCAATTTATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGTAAGCCGACTGGAAATGCTATGGTTCGTAGCTCCCCTTCCCATTTTGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATCTTTGGTTCCAGTCATATTTGGATTGACCACAACTCTCTGTCTAATTGCGCTGATGGTCTTGTTGATGCTATTATGGGATCCACCGCCATTACCGTTTCCAATAACTACTTCACCCACCACAATGAGGTTATGCTATTGGGCCACAGTGACTCATATGTTCGTGACAAGCAGATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTATCCAAAGGATGCCAAGATGCAGACACGGGTATTTCCACGTGGTAAACAATGACTATACACACTGGGTGATGTATGCTATTGGAGGCAGTGCTGAACCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCAGAATCCTTTTGCCAAAGAGGTGACAAAGAGGGTGGATACAGGGTCCGGAATATGGAAGGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCTTTTTTCACTCCATCAGGAAGAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTAGGGGCCAAACCATCTTCTTTAGTTGGTACTTTAACTGCAGGTGCTGGTGTTATTAAATGTCGCCGGGGTGGCATGTGTTAA 1335 0.4577 MELRFSSHFIFTILAITLLFAFTNAIDSNESRVVNGEEKLKMQSLNNSSMAESLSHDAINEHAVDNPEEIASMVDTTIRNHTERRSLSFFSCGTGNPMDDCWRCDKLWYRRRKRLADCAIGFGRNAIGGRDGRYYVVNNPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGSGIWKGWNWRSEGDLLLNGAFFTPSGRGAAASYARASSLGAKPSSLVGTLTAGAGVIKCRRGGMC* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1351 444 Pfam Pectate lyase 178 359 IPR002022 -
Mtr7g1351 444 Gene3D - 95 437 IPR012334 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Mtr7g1351 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Mtr7g1351 444 PANTHER PECTATE LYASE 18-RELATED 32 441 IPR045032 GO:0030570
Mtr7g1351 444 SMART amb_all 170 367 IPR002022 -
Mtr7g1351 444 SUPERFAMILY Pectin lyase-like 73 439 IPR011050 -
Mtr7g1351 444 PANTHER PECTATE LYASE 32 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1351 Mtr-Chr7 27833856 27839720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1351 31 444 Polysaccharide Lyase AT4G13710 76.485 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1351 K01728 - gmx:100809277 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1351 7 27833856 27839720 Mtr7g1351 7 27833856 27839720 ECH