Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1322 ATGAAGCCAACTTTGGGTCAAGCTCAAAGTAATTGGGAAGCTGACAAAATGCTTGATGTTTATATTCATGATTATTTTCTCAAAAGAAGGTTACACAACACTGCGAAAGCTTTTATGGCAGAAGGAAAGGTTTCAACTGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGATATATTCATCTCGAGAACAAATGAGAAGCATTCTGAGGCTGCTGCATCTTACATTGAGACACAGCAAACAAAGGCGAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAACAGCGCAATGCACAACTGCAGCGAAGAGATCCTAATCATCCTGGACTGGGTGGTTCTTTGAACCCCATGAACTCTGAAGGTATGTTGGGGCAGCCACCTGCAAGTGCATTGGCCATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGATGTATCTCCAAATCTTATTGATGCAAATAGAATGGCTCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCATGGTAACTCAGGGAATATGTCTGCGGTATTGCAGCAAATGCAGGCACGGTCTGCTTTGAACAACGACATCAAAGGAGAAGTTAACATTGGTGGAAGTCCAAAGAATTTTCCCATGGATTCATCAGTTTATCGACAATCAATTCTACAATCGAAATCTGGGTTAGGCAGTGCAGGATTAAATCAAGGAGTTACAAGTCTTCCACTGAAGGGATGGCCTCTAACTGGAATTGATCAACTAAGACCTGGTTTGGGAGTACAAGTTCCGAAGCCTAATTTATCAACGCAAAACCAGTATCTTTTGGCATCACAACAACAACAGGTCTTGGCTCAGGCTCAGGCACAACAAAACAGCCTTGGAAATTCTAATTATGGTGATATGGATCCACGCAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAATCTAACAGGAATGATGGATCTATTTCCTCCCAAATGCAATCAGGTTCACCTAAGATGAAGATGGCCCAGTCACAACAATCACTGTCTCAGCAGCAAGAGCAATTGCAGCAGCATCAACTGCAGCAGAGTAACAGAAAAAGAAAGCAAGCTTCTTCTTCTGGACCTGCCAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCGTCATCAACACACACACCTGGTGATGCATTAAATACAGCAAGCAGCATGCAACATGTTAACAATGTGCAAAAGAGCATGATGATGTATGGTACAGAAGCAACAGGAGGACTTGGATCATCTTCAAATTTACTTGATGATATAGATCGATTTGGAGATGTTGGTGCTTTAGATGATAATGTAGAGTCCTTTCTATCAAATGATGCAGGAGATGGTGGCAATCTCTATGGAACAATAAAACAAAGCCCAGCTGAGGAACAAAAAGAATCTTCAAAAACTTTCACCTTTGCTGAATTTAGCTGCATAAGAACAAGGAACATAGTTACTTCTTGTCACTTTTCTTCCGATGGAAAGTTGCTTGCCAGTGCTGGAGAAGACAAAAAGGTTACCCTCTGGAATATGGACTCTCTGCGGACAGAGCACACTCCTGAAGAACACAAATTAGTTATTACAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCAACAGCCTCATGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACCTATTGCGTTCAAGAATATAGCGGGCACAGTTCAGCCATTATGTCCCTTGATTTCCACCCTAAGAAGACTGATTTTTTCTGCTTCTGCGATAGTGAAAATGAAATTCGGTACTATAACATTACTTCATCCTCGTGTACCCGTGTATCTAAGGGAGGGAATGCAAAAGTGAGGTTTCAGCCTGGATCGGGACAGTTACTTGCTGCAGCTTCTGATAAAGTAGTGTCTATTTTTGATGTCGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGAACCGGTGAACAATATTTGCTGGGATACTACTGGAGATATGCTGGCATCTATTAGTCCAAATTTGGTGAAGATATGGAATTTGACCTCAGGAGAATGTGTTCAGGAGCTCAACTCTACTGGGAACCAGTTTTATTCTGGTCTGTTTCATCCAAGCTATGCAACTTTATTAGTAGTCGGAGGGATTTCGTCCTTAGAGTTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGCACATGAGAATGTGATTTCTGCTTTGGCTGAGTGTGCTGCTACTGGAATGGTTGCCTCTGCCAGTCGTGACAACTCTGTAAAGTTGTGGAAATAA 2355 0.4225 MKPTLGQAQSNWEADKMLDVYIHDYFLKRRLHNTAKAFMAEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAAASYIETQQTKAREQLQMQQLQLMQQRNAQLQRRDPNHPGLGGSLNPMNSEGMLGQPPASALAMKMYEERMKHPHSMDSDVSPNLIDANRMALLKSATSHQGQLVHGNSGNMSAVLQQMQARSALNNDIKGEVNIGGSPKNFPMDSSVYRQSILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPGLGVQVPKPNLSTQNQYLLASQQQQVLAQAQAQQNSLGNSNYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSISSQMQSGSPKMKMAQSQQSLSQQQEQLQQHQLQQSNRKRKQASSSGPANSTGTGNTAGPSPNSPSSTHTPGDALNTASSMQHVNNVQKSMMMYGTEATGGLGSSSNLLDDIDRFGDVGALDDNVESFLSNDAGDGGNLYGTIKQSPAEEQKESSKTFTFAEFSCIRTRNIVTSCHFSSDGKLLASAGEDKKVTLWNMDSLRTEHTPEEHKLVITDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDFFCFCDSENEIRYYNITSSSCTRVSKGGNAKVRFQPGSGQLLAAASDKVVSIFDVETDRQIYSLQGHPEPVNNICWDTTGDMLASISPNLVKIWNLTSGECVQELNSTGNQFYSGLFHPSYATLLVVGGISSLELWNMAENKSMTIPAHENVISALAECAATGMVASASRDNSVKLWK* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1322 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Mtr7g1322 784 SUPERFAMILY WD40 repeat-like 506 784 IPR036322 GO:0005515
Mtr7g1322 784 Gene3D - 479 635 IPR015943 GO:0005515
Mtr7g1322 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Mtr7g1322 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Mtr7g1322 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Mtr7g1322 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Mtr7g1322 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Mtr7g1322 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Mtr7g1322 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Mtr7g1322 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Mtr7g1322 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Mtr7g1322 784 SMART WD40_4 500 535 IPR001680 GO:0005515
Mtr7g1322 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Mtr7g1322 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Mtr7g1322 784 MobiDBLite consensus disorder prediction 325 415 - -
Mtr7g1322 784 Pfam LisH 16 42 IPR006594 GO:0005515
Mtr7g1322 784 MobiDBLite consensus disorder prediction 297 415 - -
Mtr7g1322 784 Pfam WD domain, G-beta repeat 543 577 IPR001680 GO:0005515
Mtr7g1322 784 Pfam WD domain, G-beta repeat 509 535 IPR001680 GO:0005515
Mtr7g1322 784 Pfam WD domain, G-beta repeat 666 701 IPR001680 GO:0005515
Mtr7g1322 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Mtr7g1322 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Mtr7g1322 784 Gene3D - 636 784 IPR015943 GO:0005515
Mtr7g1322 784 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 784 - -
Mtr7g1322 784 CDD WD40 507 784 - -
Mtr7g1322 784 Coils Coil 94 114 - -
Mtr7g1322 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Mtr7g1322 784 SMART Lish 14 46 IPR006594 GO:0005515
Mtr7g1322 784 Coils Coil 352 372 - -
Mtr7g1322 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 784 IPR044716 GO:0003714
Mtr7g1322 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Mtr7g1322 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 510 544 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1322 Mtr-Chr7 27492280 27500514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1322 583 783 Miscellaneous Gene Families AT5G08390 21.359 1.75e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mtr7g1322 WD40 0.064 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1322 - - gmx:100799686 1164.06