Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1296 ATGGCAGAAGCTTCGATAAAAAAATCTAAGAGGAAGAACCGAACCGTAAAACCTCACGACGCTGAACTCGACCGATTCGATTCACTTCCATGGAACTCTTCAATTCCTCAACCCGATGAAAACGACGATAACGACGCCTCTTTTTCTCTCTTCACTGGCTCTAATGAACTTGAAGGAGGTTTTCTTTCACTGGAGGAGATTGATGAAGCTGAGTATGGATTAAATATTCCCGATCCTGAAAATCATGACAGGAAGCACAACTCTAAACCGGACAAGAAGTCAAATAAGCAGAAGCAAGACGGTGCTTGTAGTGGCGGAGAAACGATGAATGATGAGAGCATCAAGTCTGAAGTGAAGAAAAAGAAAAAGAAGAAGAAAAACAAGGATGCAAAAGAAAACCAGAAAGTTGAACTTTCAAATACTGGTGTGAATGCTGATGTGAAGGACAGTGTTGATGAAGAGAACATTGATGAAACTGAATATTATGCATGGAACGAGTTGAGGCTTCATCCTCGTTTAATGAAAGCAATACACAAGTTGGGATTCAAGGAACCAACACCGATACAGAAAGCATGTGTTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCGTTTGGTTTGCCCATTTTGCAACGTCTTTTGGAGGAGCGTGAAAAGGCTGAAAGTATAAGTGGGGTAAATGGTGAAGAAGCTGCTGAAAAATACGCTACTACGGGCCTTTTGAGGAGTCTTATTATTGCTCCAACAAGAGAACTTGCACTTCAGGTAGCCAAGCATCTGAAAGCAGTAGCCAAGCATATTAATGTTAGGGTGACCGCTATAGTTGGAGGTATTTTACCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGACCTGAGATTGTGGTCGCTACTCCAGGGAGGTTATGGGAACTTATGTCATCTGGAGAAAAACATTTAATTGAGTTACATTCATTGTCTTTCTTTGTGCTTGACGAGGCTGATCGAATGGTACAAAGTGGTCATTTTAAGGAGTTACAATCAATAATTGACATGCTTCCCATGTCCAATATCTCCAGTGAAGATAATTCTAAAGATGCACAAAATTGTGTTACAGTTTCTAGCATCCAAAAAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTCGCACTGTCCGCTGATTTTCGCAAGAAGTTAAAGCGTGGTTCAATTCAGAAAAAGCAACTATCGACAGATGGTTTGGATTCTATTGAAACTCTTTCTGAGAGAGCAGGAATGAGACCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTAGCAGCTAAGATTGAAGAGTCCTTTATTGAATGCACCGAAGATGATAAAGATGCCCATTTGTATTATATTCTTACTGTCCATGGTCAAGGCCGCACAATAGTTTTTTGTACGTCAATTGCAGCTTTGCGTCATATTTCTTCCATATTGCGCATTCTTGGCGTTAATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGTGAAAATGATAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCCGGTGTTAGAACTGTTGTCCACTACCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACCGCTAGAGCTTCTGCCGAAGGCTGTAGCATTGCTTTAATCTCCCCAAAAGAAACATCAAAGTTTGCTTCATTGTGCAAGTCATTTTCAAAGGACAACTTTCAGCGATTTCCTGTGGAGAATTCATACATGCCCGAGGTTCTGAAACGTTTGTCTCTTGCACGTCAAATAGACAAGATAACTAGGAAGGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGTTCAGTGGATTTAGTTACTGAAAATTATGACAGCGAGGAGGAACAAGTTAATAAATGTAGGCAAAAGAAAGCCAGCTCTAAGCAATTGAAGAAATTGCAGATGGAGCTCAGTATGCTGATTTCACGTCCTTTGCAATCAAAAACATTTTCACATCGATATTTAGCAGGGGCTGGTGTAACACCCCTCTTGCAAGAACAATTGCAACAATTAGCAAGGCAAAAAATAAGTGATCGCCAGGGTGCAGGGTTCGGCAAAAAGGGAAGATTGGTTGTGATTGGTCAAGATTGTGTGGATGCACTTCACGCACTTCGGAGTGCTGGTGAAGAGGTGCGCATGGATACCAAGGATTCAACACGAGGACAAAGAAATATGGTGAATGCAAAGAGAAAAAGAAAAGAGGAAAAGACACGTTTGCGTGATCAGCGTAAAAAGAAGAAGAAAAATCAAAACGAGGATGATGAATAG 2397 0.4134 MAEASIKKSKRKNRTVKPHDAELDRFDSLPWNSSIPQPDENDDNDASFSLFTGSNELEGGFLSLEEIDEAEYGLNIPDPENHDRKHNSKPDKKSNKQKQDGACSGGETMNDESIKSEVKKKKKKKKNKDAKENQKVELSNTGVNADVKDSVDEENIDETEYYAWNELRLHPRLMKAIHKLGFKEPTPIQKACVPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKAESISGVNGEEAAEKYATTGLLRSLIIAPTRELALQVAKHLKAVAKHINVRVTAIVGGILPEKQERLLKARPEIVVATPGRLWELMSSGEKHLIELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISSEDNSKDAQNCVTVSSIQKKKRQTLVFSATVALSADFRKKLKRGSIQKKQLSTDGLDSIETLSERAGMRPNAAIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFRENDNGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKETSKFASLCKSFSKDNFQRFPVENSYMPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKCRQKKASSKQLKKLQMELSMLISRPLQSKTFSHRYLAGAGVTPLLQEQLQQLARQKISDRQGAGFGKKGRLVVIGQDCVDALHALRSAGEEVRMDTKDSTRGQRNMVNAKRKRKEEKTRLRDQRKKKKKNQNEDDE* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1296 798 MobiDBLite consensus disorder prediction 75 98 - -
Mtr7g1296 798 SMART helicmild6 489 570 IPR001650 -
Mtr7g1296 798 Coils Coil 768 795 - -
Mtr7g1296 798 Gene3D - 447 689 IPR027417 -
Mtr7g1296 798 Pfam DEAD/DEAH box helicase 186 395 IPR011545 GO:0003676|GO:0005524
Mtr7g1296 798 Coils Coil 114 141 - -
Mtr7g1296 798 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 334 342 IPR000629 -
Mtr7g1296 798 MobiDBLite consensus disorder prediction 752 798 - -
Mtr7g1296 798 Gene3D - 112 410 IPR027417 -
Mtr7g1296 798 MobiDBLite consensus disorder prediction 1 146 - -
Mtr7g1296 798 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 85 718 - -
Mtr7g1296 798 MobiDBLite consensus disorder prediction 30 56 - -
Mtr7g1296 798 CDD DEADc_DDX24 173 439 - -
Mtr7g1296 798 Coils Coil 646 666 - -
Mtr7g1296 798 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 449 610 IPR001650 -
Mtr7g1296 798 Pfam Helicase conserved C-terminal domain 461 569 IPR001650 -
Mtr7g1296 798 SMART ultradead3 181 422 IPR014001 -
Mtr7g1296 798 MobiDBLite consensus disorder prediction 1 26 - -
Mtr7g1296 798 PANTHER RNA HELICASE 85 718 - -
Mtr7g1296 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 358 IPR027417 -
Mtr7g1296 798 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 412 IPR014001 -
Mtr7g1296 798 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 162 190 IPR014014 GO:0003724
Mtr7g1296 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 585 IPR027417 -
Mtr7g1296 798 CDD SF2_C_DEAD 450 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1296 Mtr-Chr7 26996495 27006402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1296 157 595 Eukaryotic Initiation Factors Gene Family AT1G72730 25.885 2.53e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1296 K14805 - gmx:100806018 1196.42