Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1257 ATGTCAGGTTCAGAGAACCGTCGAGAGAAGTTTGCTGGCTTGACTCTTGACGACGTCTTAGCCAATCAAAAGAGATTAGCAACTGCACCACCTAGCAAACCATCACCTCCGAAGAGTCGAACGCTTGTAGACACCATCAAAGAAGACGAGATCAACAAAAAAGACCGCAGATCTTGGAAAGCATTCAAGGACAAGATTCGACTCAAACGCACTGGCTCTGCTTGGACATCAACGATTCATATTCCAACTTCAGATATTCCTATCCAAAATCCTAATAGTAGAAGTTTTTCTCAATTCGGTCGTCGCAACTCAGTCCGAATCCAAACTCACCACGATGACTCAGACATGTCAACCACCCAATCCATGACTCACCAAGGGGACGACCCTGACTCATCGGAGGAGTCCAATCCTCCGGCCACTAGACCACAGTTCACTCGCCGCATCTCCACACGTCTCTCGGTCGAATCACCAGAAAACTCCTCTGGCGGAGGAAATCTCCGGTCGCAACTCTCACGAAGAAATTCCACCAATGTGTCATCAGAGCCGTTTCACCGAGGACGTGTAGTGACTTTTAGAGACAACTTCGATGAGGATGATCCCGACGATGATGACAACAAGAAACCAGCGACAGTGAGGGCACTTTCAGCAAGGGAGGCAGTGGCAGCGCAGGAAGCGGCAGAAGCTGCTGCAGCAACAGAGGTGGAGACTTCAGAAGGGGCTCCAATGATGATGTCACTAATGGACTTGCTGGAGGAGACTGATAGGGAGATGGGATTGGAAGGATCAAGGTATACTTTGAGTGATGAAGAAGACATCAACGATGATGAATGTGAAGATGATGAGGATGGAGAAGGTGCCATGGAAGAGACTTGTTGTATTTGCATGGTGAAACATAAGGGTGCTGCTTTTGCTCCTTGTGGCCACAGTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTGGCTAAGGGAAGCTGTCCACTCTGCAACAATTTCATTGTAGAGATTCTCGAGATATTCTGA 1020 0.4824 MSGSENRREKFAGLTLDDVLANQKRLATAPPSKPSPPKSRTLVDTIKEDEINKKDRRSWKAFKDKIRLKRTGSAWTSTIHIPTSDIPIQNPNSRSFSQFGRRNSVRIQTHHDDSDMSTTQSMTHQGDDPDSSEESNPPATRPQFTRRISTRLSVESPENSSGGGNLRSQLSRRNSTNVSSEPFHRGRVVTFRDNFDEDDPDDDDNKKPATVRALSAREAVAAQEAAEAAAATEVETSEGAPMMMSLMDLLEETDREMGLEGSRYTLSDEEDINDDECEDDEDGEGAMEETCCICMVKHKGAAFAPCGHSFCRMCSRELMVAKGSCPLCNNFIVEILEIF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1257 339 SUPERFAMILY RING/U-box 290 335 - -
Mtr7g1257 339 CDD RING-HC 291 328 - -
Mtr7g1257 339 MobiDBLite consensus disorder prediction 114 183 - -
Mtr7g1257 339 PANTHER OS01G0917900 PROTEIN 5 339 - -
Mtr7g1257 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 339 IPR013083 -
Mtr7g1257 339 MobiDBLite consensus disorder prediction 24 47 - -
Mtr7g1257 339 PANTHER OS01G0917900 PROTEIN 5 339 - -
Mtr7g1257 339 MobiDBLite consensus disorder prediction 110 210 - -
Mtr7g1257 339 SMART ring_2 291 328 IPR001841 -
Mtr7g1257 339 Pfam Zinc finger, C3HC4 type (RING finger) 288 332 - -
Mtr7g1257 339 ProSiteProfiles Zinc finger RING-type profile. 291 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1257 Mtr-Chr7 26360696 26362376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1257 1 339 C3H Transcription Factor Family AT3G07120 34.574 8.11e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1257 - - gmx:100795449 391.734