Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1236 ATGCTTCAGATTCGGCTTAGTAAGAATCCATCCTCTGATGGGTCGGCAGGCGTGAAGCAATCGCCTGTTGAGACTGTTACGGTTGCCTGCCCTGACCATTTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGTATTGGTACAGCTACTGCTTCTTCCGTTGTTAGGAATGTGGGTCGCAGATCTCGTCGCCAGCTTGGTGAGCGAGTTCATTTCTGTGTTCGATGTGATTTTCCTATTGCGATTTATGGAAGGCTGAGCCCTTGTGACCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCATCGTGCTACCTGTGTGAAGGACGAATCCAGAAGATTCAGACTATCAAAGTGATGGAAGGAATCCTGATATGTGCAGCTCCTCATTGTCTCAAGTCATTCTTGAAGAGAGTTGATTTTGAATCTCATATCCATGAATTCCACGCCGATCTTCTTCGCCCCAATGCAGATAAAGAAGATGGAAATGAGTCAGAAGCACAAAGTGTTAGACAACCTACAGCCTCAGACTCCACTGCTCGAGGCCCCCTAAGGCAAGTTTTTTCTCCAGGTTCAAATTCTCATGATCTGGAAGACAGAACCCGTCGGCAACCACCAAGAGATCAAGCTCCTTCAAGGCCAGCAATGCAGCAAAAGCCACCATTTTTCGGCCAACAACATCACCCTTCAGATTCCATTTCTGGTTCTGTCGGAGGTATGCAGCAGGGCTTTCATCAACAAAGTTTCGACATGCAGCAGCACCCCCCACAAGAACCTGTTCAGTTTACCGACAGGCAGCAATCGGTTGGTCCAGATAACTCATTTCCTGAGTATCCAACAATGCACCCTGCACAACCCACCAATGTTCCCCCACACCCAAACTCAATGCTGAACCCACCTATGCCATTTGGTTATCCCCCTTTCCTGCAAGACCGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGACTCGTCTTCTGATATTGGTGGAGACCCAAATTCATTAATGGGTTACCCACAAGGGGTCCCAAATGGCCCAAACTTTCAAGGAAATTATCCCCAACCCTGGAATGCAGCAGGTGTTCCTTTTGAACAAGCACAAGCTAGTGGTATGGCTGTGGATCCAAGGGATTCCAAAGGTATATTGACACCACAGCCCATGGCTCTGCCACCACCACCACCACCACCTCCGGCCCACATGTTGAAACCAAACTACTATCCTGGTGATCATGGACATGATGGTCAAAGTTATGGTTGGCAGCATGATAACCGTGATAGCTTTAATGGTCAAGGCTGA 1305 0.4812 MLQIRLSKNPSSDGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTATASSVVRNVGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCDHAFCLDCARSDSSCYLCEGRIQKIQTIKVMEGILICAAPHCLKSFLKRVDFESHIHEFHADLLRPNADKEDGNESEAQSVRQPTASDSTARGPLRQVFSPGSNSHDLEDRTRRQPPRDQAPSRPAMQQKPPFFGQQHHPSDSISGSVGGMQQGFHQQSFDMQQHPPQEPVQFTDRQQSVGPDNSFPEYPTMHPAQPTNVPPHPNSMLNPPMPFGYPPFLQDRAQPFYAAPYDMPRQDSSSDIGGDPNSLMGYPQGVPNGPNFQGNYPQPWNAAGVPFEQAQASGMAVDPRDSKGILTPQPMALPPPPPPPPAHMLKPNYYPGDHGHDGQSYGWQHDNRDSFNGQG* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1236 434 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 403 IPR040383 GO:0016567|GO:0061630
Mtr7g1236 434 MobiDBLite consensus disorder prediction 370 434 - -
Mtr7g1236 434 MobiDBLite consensus disorder prediction 166 193 - -
Mtr7g1236 434 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Mtr7g1236 434 MobiDBLite consensus disorder prediction 1 20 - -
Mtr7g1236 434 MobiDBLite consensus disorder prediction 222 273 - -
Mtr7g1236 434 MobiDBLite consensus disorder prediction 388 405 - -
Mtr7g1236 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Mtr7g1236 434 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 403 - -
Mtr7g1236 434 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Mtr7g1236 434 MobiDBLite consensus disorder prediction 154 273 - -
Mtr7g1236 434 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1236 Mtr-Chr7 26062117 26066141 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1236 1 430 C2H2 Transcription Factor Family AT5G01160 44.749 1.05e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1236 K15685 - gmx:100817582 682.559