Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1211 ATGGCAACTTCAGAGAATCAAGTTCCTCCGGCACCTGATGTTGTTGGTCATGCCTTTGTTGAACAGTACTACTACATGTTGCATGAAAGCCCTGAGCATGTGCATAGGTTTTACCAAGATGTCAGTAAGCTTGGTCGTCCTGAACCAAATGGTATCATCGGTATCACAACCACAATGGCTGAAATTGACAAGAAGATACTGTCAATGGGTTATAGTGAACTTAGCGCGGAGATCCTATCTGTGGATGCACAAGAGTCTTTTGGCGGGGGAGTCATTGTCTTGGTCACTGGATTTATGATAGGAAAGGATAACGTTAAGCAGAAATTTACTCAATGTTTCTTCCTTGCTCCTCAAGAGAAAGGCTACTTTGTTTTGAATGATATTTTCAGATATGTTGATGAAAATGAAATCAAGGAACCTGATCATGCAATCAGATCTCCTGCCTCTCCTGAGAATGTGTTGGATCCTCTTGTGCTGGAGACACAAGTTCCAGAGCAAATATCTGTGGCTGCTGAGAATGGTGATAGGGGTGAACTAGAAGTCTACAATCCAGAAAATGGGCAAGTGTCTGTTGAAGAAGAGGAAGCTCCTGTTCCTGAGGTTCTTGTTGAAATTCCTAATGATTCACAGAAAGCAGCTGGTTTTGATCATGTTCCTGATGATTCACAGAAGGTAGCTGAATTGGCATCCCAAATTGAAGAAGTGCCGAAGAAATCATATGCTTCCATTCTTAAGGTAATGAAAGGGGCTGCTGCTCCGTCCTCCGTAATGACAGCTGCTTCTGTGAGAACTTCTATTAAGATTCAAGAACAGCAGAGTGCTGCTGCACCTTCACCATCCAGTGTGCCAGAAACAAATGGTTCTAGTATAAGTACTAATGAAGGTGGAAACAATCAAGAAACTGAAGCTGAGGGCTATTCAATTTATTTGAAAGGGCTGCCTGGAAATGCTACGCATGCCCTTGTTGAGAATATGTTCAAGAAGTTTGGCCCTATCAAGAGTGGCGGTGTTCAAGTTCGGACAGCAAAGGGATTTCACTTTGGCTTTGTGGAGTTTGAAGAGGAAAGTGCTGCGCTAAGTGCAATCGAGGCTTCACCAATTCTGATCAATGACCGTCAAGTTGTGATAGAGGAAAAGAGGTCAACTAATCGAGGTTATGGCAGGGGGCCTGGAAACTATGGAAGGCCGCTCAGTTTCAGGGATGAGGGAGCAAGAGGGCATGGAAACTATGGAAATAGCCGAAGTTTTGGCCGTGCAGACTACAATGGTCGTGGAGAATACAATGGCCGTGGAGACTATAACAGCCGTGGAGACTATAACAGTCGTGGAGACTTCAATGGTCGTTCAGACTATAACGGAAGAGGGGAATATGGATATGGTTATAGGAATGGCAATCGGGGAGGGTTTTCTAGTCGTGGAGGCGATGGATATCAGAGAAACGATCACATGGGAACCAATGGTGGCCGCATGAATCGTACTGGTGGGTCTTCTGTTAATTCAGCACCCAAATCTACCACTGCCCTTCGTGTTCCTGCCTCTGCTTGA 1545 0.4485 MATSENQVPPAPDVVGHAFVEQYYYMLHESPEHVHRFYQDVSKLGRPEPNGIIGITTTMAEIDKKILSMGYSELSAEILSVDAQESFGGGVIVLVTGFMIGKDNVKQKFTQCFFLAPQEKGYFVLNDIFRYVDENEIKEPDHAIRSPASPENVLDPLVLETQVPEQISVAAENGDRGELEVYNPENGQVSVEEEEAPVPEVLVEIPNDSQKAAGFDHVPDDSQKVAELASQIEEVPKKSYASILKVMKGAAAPSSVMTAASVRTSIKIQEQQSAAAPSPSSVPETNGSSISTNEGGNNQETEAEGYSIYLKGLPGNATHALVENMFKKFGPIKSGGVQVRTAKGFHFGFVEFEEESAALSAIEASPILINDRQVVIEEKRSTNRGYGRGPGNYGRPLSFRDEGARGHGNYGNSRSFGRADYNGRGEYNGRGDYNSRGDYNSRGDFNGRSDYNGRGEYGYGYRNGNRGGFSSRGGDGYQRNDHMGTNGGRMNRTGGSSVNSAPKSTTALRVPASA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1211 514 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 364 IPR000504 GO:0003723
Mtr7g1211 514 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 4 418 IPR039539 -
Mtr7g1211 514 MobiDBLite consensus disorder prediction 469 514 - -
Mtr7g1211 514 MobiDBLite consensus disorder prediction 484 514 - -
Mtr7g1211 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 381 IPR000504 GO:0003723
Mtr7g1211 514 SUPERFAMILY NTF2-like 12 132 IPR032710 -
Mtr7g1211 514 SUPERFAMILY RNA-binding domain, RBD 299 410 IPR035979 GO:0003676
Mtr7g1211 514 Pfam Nuclear transport factor 2 (NTF2) domain 15 131 IPR002075 -
Mtr7g1211 514 MobiDBLite consensus disorder prediction 382 455 - -
Mtr7g1211 514 Gene3D - 5 135 - -
Mtr7g1211 514 CDD NTF2 12 133 IPR018222 -
Mtr7g1211 514 ProSiteProfiles Nuclear transport factor 2 domain profile. 15 131 IPR018222 -
Mtr7g1211 514 SMART rrm1_1 307 377 IPR000504 GO:0003723
Mtr7g1211 514 CDD RRM_SF 308 377 - -
Mtr7g1211 514 MobiDBLite consensus disorder prediction 270 300 - -
Mtr7g1211 514 Gene3D - 285 387 IPR012677 -
Mtr7g1211 514 PANTHER NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN-RELATED 4 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1211 Mtr-Chr7 25546449 25551661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1211 308 376 Eukaryotic Initiation Factors Gene Family AT2G36660 36.620 1.05e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1211 K24983 - gmx:100800392 594.734