Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1186 ATGGCAAAACCAGGGGTGTTAGATTCTGATCCAGAAGTTATGTTGAAGAAAGCTTTAGAGTTGAAGAAGGAGTTGAAAAAGCTTGTGAAGTCCATTGTTGATGATGAAGATATAAGCATTGAAGCAATTGATAAAGCAAAAGAAACTCTTTGTGTTCTTAAAGATTTGAAGCTAAGAAAGAAATCTCAATCTTCAAATTCAATGTCTTTTAAGATAAACAAGAATGTTACTTTCCCAGATGAATTCAAATGTCCACTTTCCAAGGAATTTATGAGAGATCCTGTCATTGTTGCTTCTGGTCAGACATATGATAGACCTTTCATTCAAAGATGGTTTAATGCTGGAAATAGGACATGTCCTCAAACTCATCAAGTTCTCTCACACACTCTGCTTACTCCAAATCACCTTATAAGAGAAATGATAGAAAAATGGTCTAAAAATCAAGGACTTGAATTGTGCAATGCTATGAGTTACATTAGCGATGAAGGTGCTAAAGAAGCTGATCAGAGTCACTTTTTATGTTTGCTTGAGAAAATGTCTTCAACACTTTGTGATCAGAAAGAAGCTGCAAAACAACTTAGATTATTGACAAAGAAGCATCCTTGTTTTCGAGTACTTTTTTGTGATTTCGAACATGCAATTCCTCAATTGCTTAAGCCAATTTGTGAAGGAGATAGTATTAACCATGAACTTCAAGAAGATGTGATCACAACCCTCCTCAATATCTCGATACATGACAACAACAAGAAACAAGTGGCTGAAATTCCAATGGTAATTCCAATCCTCAAGAAGGCTTTGAGATGTGGAACAATCGAAACACGAGCCAACGCTGCAGCAACCCTTTTCACGTTATCAGCACTAGACTCAAACAAAGAACTTATAGGAAAATCCAATGCCTTAAAACCGCTTATCGACCTATTGGAAGAAGGGAATCCCTTAGCTATGAAGGATGTTGCTTCAGCAATATTCACTTTATGTATGATGCATGACAACAAAGCAATAGCAGTGAAAGACGGTGCGGTTAGAGTGATTATGGCAAAGATGAAAAACCGAGTTCACGTCGACGAATCACTAGCTATCCTTGCCCTACTTTCGACTCATCAGAAGGCTGTCCTTGAAATGGCAGAGCTTGGAGCTGTTCCTTGTTTGCTAAGCATTATGCGAGAGAGCTCGTGCGAACGCAATAAAGAGAACTGTGTCGCAATCCTTCAAACTATATGTCTTTATGATAGATCCAAGTTGAGGGAAATAAAGGAAGAGGAGAACAGTCACAGAACAATTTCTGAACTTGCAAAAAGTGGAACTTCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGATTGCATAGGGTTGTTAACATCACACACACTGCATAA 1380 0.3804 MAKPGVLDSDPEVMLKKALELKKELKKLVKSIVDDEDISIEAIDKAKETLCVLKDLKLRKKSQSSNSMSFKINKNVTFPDEFKCPLSKEFMRDPVIVASGQTYDRPFIQRWFNAGNRTCPQTHQVLSHTLLTPNHLIREMIEKWSKNQGLELCNAMSYISDEGAKEADQSHFLCLLEKMSSTLCDQKEAAKQLRLLTKKHPCFRVLFCDFEHAIPQLLKPICEGDSINHELQEDVITTLLNISIHDNNKKQVAEIPMVIPILKKALRCGTIETRANAAATLFTLSALDSNKELIGKSNALKPLIDLLEEGNPLAMKDVASAIFTLCMMHDNKAIAVKDGAVRVIMAKMKNRVHVDESLAILALLSTHQKAVLEMAELGAVPCLLSIMRESSCERNKENCVAILQTICLYDRSKLREIKEEENSHRTISELAKSGTSRAKRKASGILERLHRVVNITHTA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1186 459 Gene3D - 152 454 IPR011989 -
Mtr7g1186 459 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 457 - -
Mtr7g1186 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 151 IPR013083 -
Mtr7g1186 459 SUPERFAMILY ARM repeat 182 449 IPR016024 -
Mtr7g1186 459 SMART Ubox_2 81 144 IPR003613 GO:0004842|GO:0016567
Mtr7g1186 459 ProSiteProfiles U-box domain profile. 77 151 IPR003613 GO:0004842|GO:0016567
Mtr7g1186 459 CDD RING-Ubox_PUB 82 124 IPR045210 -
Mtr7g1186 459 PANTHER U BOX DOMAIN-CONTAINING 5 457 - -
Mtr7g1186 459 Pfam U-box domain 79 147 IPR003613 GO:0004842|GO:0016567
Mtr7g1186 459 SUPERFAMILY RING/U-box 76 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1186 Mtr-Chr7 25175436 25178560 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1186 140 459 U-box Gene Family AT3G07360 59.692 1.86e-124 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1186 - - gmx:100777031 697.967