Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1163 ATGGAGGTTACTAAGAGTTGTGAAAATGAAGCTATGATGATGGTACCAACAAGAGCGAGTTCAAGACTCCAAAATCTCTCTAAGATTCAATATAACATTTACAACAGCAGCGGCGACAAAGTTTTTGGCCAACATGTTGAAAAGACTGAACTTGAAAGTTCAAAGGAAAGTTTGGCGACAATAACAAAGGTTCGTTCACAACATCAAAATCGAAACAAAATTCCAGATGATATTTCCCATAAGAGAGGTATGGTCAGTTTTGAAGACAATGCTGAAAAGACTGAACTTGGAAGTAAAGAGGAAAGTTTGGTGTCAACAACAAAGGTTTGTTCACAACTTCAAAATCGAAACGAAATTCCAGATGATATTTCCCATAAGAGAGGTATGGTTAGTCTTGAAGACAATGTTGTTGAGAAGAGAACCAAGATCAACTCTTTGAGAAGAAAACCTTGCTCTCGTTCAAGATCAACAAGTAATGATTCACTTGTCTTTGATGGACTTGACTTTAGGGGCATTTTGTCCTTGAGAGAAACATCTAGGCTTGCCAATCTTCGTTGCCTTGCTAAGGTAGAGAAAAATGGCATTGATAATGAATACGTTCCAGGAATTACTACTTCGAAGTATCTGATAAATAAGCTTCGGGAACTTGCTAAAGTGGGAACATACAAGGTTCATTTAATGGAAGGACAAGTCTCTAAAGCTCTTTCTTCCTCTCCAAGTTTGGTATGCAAGGACATTAGCAATGGACAAGAAGCTATCAGCATTATTGCAACCAATGATTTTGATGATCCTCCAGTTGCACCAACAGGTTTTGAATACATTACATCAAATAAAGTTTCACCAAGCATTGAAGTTCCATCTAATGCTGCGGGATGCAATTGCAAGGGAAGTTGTAGAACCAAAAGATGTTCTTGTGCTAATCATAATGGCTCGGAGTTTTCATACAATAACATTGGCAGATTGATCGAGCCTCTTGACATCGTGGTTGAATGTGGGCCGCAATGTGGATGCGGACCTAAATGTGGAAACAAGATTTCTCAACAGGGATTAAGTTACCGCCTTGAGGTTTATCGTACTGCCAAGAAAGGTTGGGCGGTAAGAACATGGGACTTTATCCCATCAGGTGCACCCGTTGTCGAATATATTGGTGTACTTAGTAGAGACGATGAGCTAGGAAGTGCCAACGGAAATGATTATATATTCGATATTGATTGTTTGCACACAATCAATAGTGTAGATGGAAGAGAGAGACGGTTGGGTAATGTACCATTACCTATAAACAATTTATCTGAAAAAAAGGACGAGTTAATGGAAAAAGATCCTGAATATTGCATAGATGCTGGTTCTTTTGGTAATGTTTCAAGATTCATCAACCATGGATGTGAACCAAATCTCTTTGTACAATGTGTTCTCAGCTGCCACAGAGATCCTAGACTAGCTCGTGTGGTGCTATTTGCAGCAGAAGACATACCTCCTTATCAGGAACTCACCTATGACTATGGTTACACACTCGATAGTGTGTCTGGTTCTGATGGAAAAATCAAACAGCTTCAATGTCATTGTGGTGCAAAGGAATGTCGTAAGCGTTTGTACTAG 1596 0.3929 MEVTKSCENEAMMMVPTRASSRLQNLSKIQYNIYNSSGDKVFGQHVEKTELESSKESLATITKVRSQHQNRNKIPDDISHKRGMVSFEDNAEKTELGSKEESLVSTTKVCSQLQNRNEIPDDISHKRGMVSLEDNVVEKRTKINSLRRKPCSRSRSTSNDSLVFDGLDFRGILSLRETSRLANLRCLAKVEKNGIDNEYVPGITTSKYLINKLRELAKVGTYKVHLMEGQVSKALSSSPSLVCKDISNGQEAISIIATNDFDDPPVAPTGFEYITSNKVSPSIEVPSNAAGCNCKGSCRTKRCSCANHNGSEFSYNNIGRLIEPLDIVVECGPQCGCGPKCGNKISQQGLSYRLEVYRTAKKGWAVRTWDFIPSGAPVVEYIGVLSRDDELGSANGNDYIFDIDCLHTINSVDGRERRLGNVPLPINNLSEKKDELMEKDPEYCIDAGSFGNVSRFINHGCEPNLFVQCVLSCHRDPRLARVVLFAAEDIPPYQELTYDYGYTLDSVSGSDGKIKQLQCHCGAKECRKRLY* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1163 531 Pfam SET domain 363 501 IPR001214 GO:0005515
Mtr7g1163 531 SMART PostSET_3 515 531 IPR003616 -
Mtr7g1163 531 Pfam Pre-SET motif 246 344 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr7g1163 531 ProSiteProfiles Pre-SET domain profile. 290 349 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr7g1163 531 ProSiteProfiles SET domain profile. 352 501 IPR001214 GO:0005515
Mtr7g1163 531 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 53 530 - -
Mtr7g1163 531 SMART set_7 352 507 IPR001214 GO:0005515
Mtr7g1163 531 SUPERFAMILY SET domain 238 507 IPR046341 -
Mtr7g1163 531 ProSiteProfiles Post-SET domain profile. 515 531 IPR003616 -
Mtr7g1163 531 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 53 530 - -
Mtr7g1163 531 SMART preset_2 243 336 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr7g1163 531 Coils Coil 129 149 - -
Mtr7g1163 531 Gene3D SET domain 236 531 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1163 Mtr-Chr7 24905985 24910952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1163 178 531 EF-hand Containing Proteins AT5G13960 53.911 1.27e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr7g1163 SET 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1163 - K11420 mtr:MTR_7g052480 1045.42