Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1113 ATGGCCAATGAATTTCCTCCAACCCATTTTTTTAAGATCATATGTGATCAAAGCCTTCATCAAGGAAAGCTTATAATCCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGGTAAAAAGTGATGGTAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGTGAAGTATCATTCTTTATCTCAAGGCCATCTTCTGCTTTTCAAATATGGAAGAACTTCCCATTTTCATGTGCACATCTTTGATAAGAGTGCCTTAGAGATAAAATACCCTTCCCAAAGAGTTGAATCAAAAAGGGTATCCAACGATCTAGGAAATAAACCTCAGAATGATGAAGATTTGGAAGATTATATAGCAAGTAAAAAGAGAAAAACTAACTTGTCATTCGAATTTAATCAACCATATGAAATTGGAAGCAATAGCTGTGTTAATGTTGGGAAATTGGAAAAGGTAGCAGCTTTGAATCATATTGACAAAAAGTGTAAAGGTACGAGAATTTGTGTTGTCAATGTCTCATGA 573 0.3333 MANEFPPTHFFKIICDQSLHQGKLIIPRKFVEKYGEGLSNAIYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFVKYHSLSQGHLLLFKYGRTSHFHVHIFDKSALEIKYPSQRVESKRVSNDLGNKPQNDEDLEDYIASKKRKTNLSFEFNQPYEIGSNSCVNVGKLEKVAALNHIDKKCKGTRICVVNVS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1113 190 PANTHER B3 DOMAIN-CONTAINING 6 152 - -
Mtr7g1113 190 Pfam B3 DNA binding domain 17 101 IPR003340 GO:0003677
Mtr7g1113 190 SMART B3_2 10 102 IPR003340 GO:0003677
Mtr7g1113 190 Gene3D - 3 103 IPR015300 -
Mtr7g1113 190 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Mtr7g1113 190 CDD B3_DNA 9 100 IPR003340 GO:0003677
Mtr7g1113 190 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mtr7g1113 190 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1113 Mtr-Chr7 24067047 24067808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1113 4 148 B3 DNA Binding Superfamily AT4G01580 35.862 2.76e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr7g1113 B3 6.5e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1113 - - lja:Lj1g3v3690290.1 228.409