Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1112 ATGGCTAGTGAAATTGCTGAGGTGAAGCCAATCCAATTTTTCAAGATCATACTTGCTCAAAACCTTCTCCAAGGAAACCTTAGGATGCCAAGAAAGTTTGTGGAAAAATATGGAAAAGGTCTACCAAAAGCTATATGTCTAAAGACTCCAAATGGTGCAAAATGGAGATTAAATTTGGTTAAGAGTGATGGCAAGATATGGTTTGAGAAGGGTTGGAAACAATTTGCAGAGCATCACTCTATAGGTCATGGCCATCTTCTGCTTTTCAGATATGAAAAAACTTCCAAATTTGAGGTACAAATCTTTGGAAAGAGTGCTTTGGAGATAGACTACTCTTTCAAAAGAGTTGAATCTAAAAAGTTCTCCAATGGTCAAGGAAATAAGCCTCCAAATGGTGAAAATTGTAGAGCAGCTCAAAAGAGAAAAGCTAACTCCTCCTCTGAATTTCATCGACAATGTGAAATTGCAAGCAGTAGTTGTGTAAAATTTGGAAAATCGCAGAAGCTGGCTGTGCAGCAAGTTGATAGAATGTCCAATGGAAAACAAGTGATTACTACTGCTAAGAAAGTTACAACTCTTGAAAGAGCACAATCTTTCAAAATATGTAATCCATCCTTTGTTGTTGTCATGGGTGCATCATACGTTGAACGCCGTTTTCTTCTGAATATACCATGTTTGTTTGGTAAGACACACTTTGATTTGAATAAGAAAAGAGAAGATATTCAACTTCAGGCGTTGAATGGGAGAGTATGGTCTGCTAGGTACTCTACCAGGAATAGGACGTCCGATAATGGAATAAGATTTGAACTCACAAGTGGATGGGAGGAGTTTGCAAAGGACAATAACTTGAAAGTTGGTGATGTTTGCAAATTTGAGCTCATCTCTAGCACTATACTTACCTTCATTGTTCACGTCTTTAGAGAAACAGACAATGACAAGAAAAAGTGTTCAACATCTCAAAAATCTCCCCAAATAAAGGGTGAAGCAGTTTTATTTCTGCAAGGATAG 1008 0.375 MASEIAEVKPIQFFKIILAQNLLQGNLRMPRKFVEKYGKGLPKAICLKTPNGAKWRLNLVKSDGKIWFEKGWKQFAEHHSIGHGHLLLFRYEKTSKFEVQIFGKSALEIDYSFKRVESKKFSNGQGNKPPNGENCRAAQKRKANSSSEFHRQCEIASSSCVKFGKSQKLAVQQVDRMSNGKQVITTAKKVTTLERAQSFKICNPSFVVVMGASYVERRFLLNIPCLFGKTHFDLNKKREDIQLQALNGRVWSARYSTRNRTSDNGIRFELTSGWEEFAKDNNLKVGDVCKFELISSTILTFIVHVFRETDNDKKKCSTSQKSPQIKGEAVLFLQG* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1112 335 CDD B3_DNA 13 102 IPR003340 GO:0003677
Mtr7g1112 335 PANTHER B3 DOMAIN-CONTAINING 4 308 - -
Mtr7g1112 335 CDD B3_DNA 204 307 IPR003340 GO:0003677
Mtr7g1112 335 SMART B3_2 13 105 IPR003340 GO:0003677
Mtr7g1112 335 SMART B3_2 206 309 IPR003340 GO:0003677
Mtr7g1112 335 Pfam B3 DNA binding domain 206 308 IPR003340 GO:0003677
Mtr7g1112 335 Pfam B3 DNA binding domain 13 104 IPR003340 GO:0003677
Mtr7g1112 335 ProSiteProfiles B3 DNA-binding domain profile. 206 309 IPR003340 GO:0003677
Mtr7g1112 335 Gene3D - 183 311 IPR015300 -
Mtr7g1112 335 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 308 - -
Mtr7g1112 335 SUPERFAMILY DNA-binding pseudobarrel domain 203 310 IPR015300 -
Mtr7g1112 335 SUPERFAMILY DNA-binding pseudobarrel domain 9 105 IPR015300 -
Mtr7g1112 335 Gene3D - 4 106 IPR015300 -
Mtr7g1112 335 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1112 Mtr-Chr7 24058703 24061761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1112 13 310 B3 DNA Binding Superfamily AT3G18990 30.321 3.56e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr7g1112 B3 8.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1112 - - mtr:MTR_7g050580 450.669