Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1110 ATGGGTAGTGAAATTCCTGAGGTGAGATCAACCCACTTTTTCAAGATAATACTTGCTCAAAATCTTCATGAAGGAAAGCTTATGATGCCGAGAAAGTTTGTAGAGAAATATGGAGAAGGTTTATCAAAAGCTATATATCTAAAGACTCCAAACGGGGCGAAGTGGAAATTAAATTTGGTAAAAAGTGATGGAAAAATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAAAGCATCACTCTCTAGCACATGGCCATCTTCTGCTTTTCAAATATAAAAGAAATTCTCATTTTCTTGTGCACATCTTTGAAAAGAGTGCGTTCGAGATAAATTACCCTTTCCAAAGAGTTGCAGCTAAAACTAATAGGGTCTCCAATGGTCAAGGAAATAAACCTCCAAATGGTGAAAGTCGTAGAGCATCTCAAAAGAGAAAAGATAACTCCTTTGAACTTCATCAACCATGTGACATTGGAAGCAGTAGTTGTTTTAGAGTTGAAAAACTGCAGAAGGTAGCATCTTTGCATCATACTGACAGAGAGTCCAAAGGGAAAGAAGTGATTACTGGTAAGAGAGTTACAGCTCTTGAAAGAGCACAATCTTTCAAAACAAGCAATCCGTCCTTTGTTGTTGTCATGCGTGCATCATACGTTAAACATCATTTTCTACTGAATATACCACGTTCGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATATTTATTTTCAGGTGTTAAATAAAGGAGTTTGGCCTGCAAAGTACTCTATCAAGAAGACCCGTAACGGACTACATTTTGAACTCATGACAACCGGATGGAAGGCATTTGCAAAGGACAATAAGTTGAAAGTTGACGATGTTTGCAAGTTTGAGCTCATCTCTTGCACTATACTTACCTTCATTGTTCATATCTTTAGAGAGACAGACAATGACAACACCAATTGTTCTACATTTCAAAAATCTTTCCAGATGAAAGAAGAAGCTACTTAA 993 0.3676 MGSEIPEVRSTHFFKIILAQNLHEGKLMMPRKFVEKYGEGLSKAIYLKTPNGAKWKLNLVKSDGKIWFEKGWKEFAKHHSLAHGHLLLFKYKRNSHFLVHIFEKSAFEINYPFQRVAAKTNRVSNGQGNKPPNGESRRASQKRKDNSFELHQPCDIGSSSCFRVEKLQKVASLHHTDRESKGKEVITGKRVTALERAQSFKTSNPSFVVVMRASYVKHHFLLNIPRSFGNRHFDLDKKRGDIYFQVLNKGVWPAKYSIKKTRNGLHFELMTTGWKAFAKDNKLKVDDVCKFELISCTILTFIVHIFRETDNDNTNCSTFQKSFQMKEEAT* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1110 330 MobiDBLite consensus disorder prediction 121 135 - -
Mtr7g1110 330 ProSiteProfiles B3 DNA-binding domain profile. 207 309 IPR003340 GO:0003677
Mtr7g1110 330 MobiDBLite consensus disorder prediction 136 150 - -
Mtr7g1110 330 SMART B3_2 13 105 IPR003340 GO:0003677
Mtr7g1110 330 SMART B3_2 207 309 IPR003340 GO:0003677
Mtr7g1110 330 Gene3D - 185 311 IPR015300 -
Mtr7g1110 330 SUPERFAMILY DNA-binding pseudobarrel domain 9 105 IPR015300 -
Mtr7g1110 330 MobiDBLite consensus disorder prediction 121 151 - -
Mtr7g1110 330 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Mtr7g1110 330 PANTHER B3 DOMAIN-CONTAINING 7 308 - -
Mtr7g1110 330 CDD B3_DNA 205 307 IPR003340 GO:0003677
Mtr7g1110 330 CDD B3_DNA 12 102 IPR003340 GO:0003677
Mtr7g1110 330 Gene3D - 5 106 IPR015300 -
Mtr7g1110 330 SUPERFAMILY DNA-binding pseudobarrel domain 202 310 IPR015300 -
Mtr7g1110 330 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
Mtr7g1110 330 Pfam B3 DNA binding domain 207 308 IPR003340 GO:0003677
Mtr7g1110 330 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1110 Mtr-Chr7 24013479 24016272 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1110 13 310 B3 DNA Binding Superfamily AT3G18990 26.571 8.83e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr7g1110 B3 5.6e-18 CL0405