Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1109 ATGCCAAGAAAATTTGTGGAGAAATATGGAAAAAGTCTACCAAAAGAAACATGTCTAAAGACTCCAAATGGTGGAAAATGGAAATTAAATTTGGTAAAAAGTGATGGCAAGATATGGTTTGAAAAGGGTTGGAAACAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTCTTCTTTTCAGATATGAAAAAACTTCCAATTTTGAGGTACATATTTTTGAAAAGAGTGCCTTGGAGACAAATTACCCTTCCAAAAGAGTTGAAGCTAAAACGATCTCCAATGATCAAGGAAATGAATCTCTAAATGGTGAAAATTGTAGAGCAGCTCAAAAGAGAAAAGCTAATTCCTTTGAATTTGGAAGTAGTAGTTGTGTTAAAGTTGGGAAATCACAAAAGAAATCCAAAGGAAAACAAGTGATTACTGCTGCTGAAAAAGTTACAACTCTTGAAAGAGCAAAATCTTTCAAAATAAGAAATCCATCCTTTGTTGTTGTCATGCGTGCATCATACGTTGAACATAAATTTTTAATGAATATACCACGTAAGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATATTCATTTTCAGGTGTTAAATGAAGGAGTTTGGCCTACAAGGTTTTCTATCAGGAAGTCCAGAACAGGACTACAGTTTGAAATCACAGGTGGATGGAAGGCATTTGCAGAGGACAATAAGTTGAAAGTTGGCGATGTTTGCAAATTTGAGCTCATCTCTTGCACTATACTTACCTTCATTGTTCATATCTTTAGAGAGACAGACAATGACAACACAAATTGTTCAGCATCTCAAAAATTTTCCCAAGTGAAAGAAGAAGCTTCTCAAGGATAA 864 0.3495 MPRKFVEKYGKSLPKETCLKTPNGGKWKLNLVKSDGKIWFEKGWKQFAEHHSLAHGHLLLFRYEKTSNFEVHIFEKSALETNYPSKRVEAKTISNDQGNESLNGENCRAAQKRKANSFEFGSSSCVKVGKSQKKSKGKQVITAAEKVTTLERAKSFKIRNPSFVVVMRASYVEHKFLMNIPRKFGNRHFDLDKKRGDIHFQVLNEGVWPTRFSIRKSRTGLQFEITGGWKAFAEDNKLKVGDVCKFELISCTILTFIVHIFRETDNDNTNCSASQKFSQVKEEASQG* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1109 287 CDD B3_DNA 161 262 IPR003340 GO:0003677
Mtr7g1109 287 ProSiteProfiles B3 DNA-binding domain profile. 163 264 IPR003340 GO:0003677
Mtr7g1109 287 PANTHER B3 DOMAIN-CONTAINING 1 263 - -
Mtr7g1109 287 CDD B3_DNA 1 74 IPR003340 GO:0003677
Mtr7g1109 287 SUPERFAMILY DNA-binding pseudobarrel domain 1 84 IPR015300 -
Mtr7g1109 287 ProSiteProfiles B3 DNA-binding domain profile. 1 77 IPR003340 GO:0003677
Mtr7g1109 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 263 - -
Mtr7g1109 287 SMART B3_2 163 264 IPR003340 GO:0003677
Mtr7g1109 287 SMART B3_2 2 77 IPR003340 GO:0003677
Mtr7g1109 287 Pfam B3 DNA binding domain 163 263 IPR003340 GO:0003677
Mtr7g1109 287 Pfam B3 DNA binding domain 2 76 IPR003340 GO:0003677
Mtr7g1109 287 SUPERFAMILY DNA-binding pseudobarrel domain 160 265 IPR015300 -
Mtr7g1109 287 Gene3D - 140 266 IPR015300 -
Mtr7g1109 287 Gene3D - 1 78 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1109 Mtr-Chr7 24009280 24010746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1109 1 265 B3 DNA Binding Superfamily AT3G18990 29.846 1.64e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr7g1109 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1109 - - mtr:MTR_7g050580 565.844