Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1108 ATGGCTAGTGAAACTCTTGAGTTGAAGCCAATCCACTTTTTCAAGATAATACTTGCTCAAAATCTTCAGGAAGGAAAGCTTATGATGCCAAGAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAAATGCTATATATCTAAAGACTCCAAATGGTGCAAAGTGGAAATTAAATTTGCTAAAAATTAATGGCAAGATATGGTTTGAAAAGGGTTGGAAAGAATTTGCAGAGCATCATTCTCTAGCTCATGGCCATCTTCTGCTTTTCAAATATCTAAGAAATTCTCGTTTTCTTGTGCGCATCTTTGAAAAGAGTGCCTTAGAGATAAATTATCCATTCCAAAGAGTTGCAGCTAAAAATGTCTCCAATGGTCAAAAGAGAAAAGCTAACTCTTCTTTTGAATTTCATCAACCATGTGAAATTGGAAGCAATAGTTGTGTTGAAGTTGATAAATTGAATAAGGTAGCAACTTTGCATCATGCTGGCAGAGAGTCCAAAGGGAAACAAGTGCTTGCTACAAAGAGAGTTACAGCTCTTGAAAGAGCACAATCTTTCAAAACATGTAACCCATCCTTTGTTGTTGTCATGCGCGCATCATACGTGGAACACCGATTTCTTGTGAATATACCACGTAAGTTTGGTAATAGACACTTTGATTTGGATAAGAAGAGAGGAGATGTATATTTGGTGTTAAATGAAGGAATTTGGCCTGCAAAGTACCTAATCAGGATGACCCTTAAAGGACCACATTTTGATCTCACAACTGGATGGAAGGCATTTGCAAAGGACAATAAGTTGAAAGTTGACGATGTTTGCAAATTTGAGCTCATCTCTTGCACTATACTTACCTTCATTGTTCACATCTTTAGAGAGACAGACAATGACAACACAAATTGTTCAGCATCTCAAAAATTTTCCCAAGTGAAAGAAGAAGCTTCTCAAGGATAA 948 0.366 MASETLELKPIHFFKIILAQNLQEGKLMMPRKFVEKYGEGLSNAIYLKTPNGAKWKLNLLKINGKIWFEKGWKEFAEHHSLAHGHLLLFKYLRNSRFLVRIFEKSALEINYPFQRVAAKNVSNGQKRKANSSFEFHQPCEIGSNSCVEVDKLNKVATLHHAGRESKGKQVLATKRVTALERAQSFKTCNPSFVVVMRASYVEHRFLVNIPRKFGNRHFDLDKKRGDVYLVLNEGIWPAKYLIRMTLKGPHFDLTTGWKAFAKDNKLKVDDVCKFELISCTILTFIVHIFRETDNDNTNCSASQKFSQVKEEASQG* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1108 315 SMART B3_2 13 105 IPR003340 GO:0003677
Mtr7g1108 315 SMART B3_2 192 292 IPR003340 GO:0003677
Mtr7g1108 315 CDD B3_DNA 12 102 IPR003340 GO:0003677
Mtr7g1108 315 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Mtr7g1108 315 Pfam B3 DNA binding domain 192 291 IPR003340 GO:0003677
Mtr7g1108 315 Pfam B3 DNA binding domain 14 104 IPR003340 GO:0003677
Mtr7g1108 315 Gene3D - 170 294 IPR015300 -
Mtr7g1108 315 PANTHER B3 DOMAIN-CONTAINING 3 291 - -
Mtr7g1108 315 CDD B3_DNA 190 290 IPR003340 GO:0003677
Mtr7g1108 315 SUPERFAMILY DNA-binding pseudobarrel domain 188 293 IPR015300 -
Mtr7g1108 315 ProSiteProfiles B3 DNA-binding domain profile. 192 292 IPR003340 GO:0003677
Mtr7g1108 315 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Mtr7g1108 315 Gene3D - 6 106 IPR015300 -
Mtr7g1108 315 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 3 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1108 Mtr-Chr7 24003344 24005950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1108 13 116 B3 DNA Binding Superfamily AT4G01580 45.192 2.24e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr7g1108 B3 8.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1108 - - mtr:MTR_7g050580 443.736