Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1068 ATGGCTGGTCTTTCTAACAGAACTCGTAGCAAGAATGTTCCATTGTTTGGTAGCATTTCTCATGATGTGTCATTTTATTCGAAACCAAAGCGGCGAAAGAGTGATGAAGATGATAAAGGTATGAACTATGTTTCTGGCAGAACTCGTAGCAAAAATGTGCCATTGTTTGGTTCTCTTTCTGTTGGTGTTTCTTGTTCTAAGAAAAGGAAGGTAAATGAAAAACCTTTTGTTATTTCTATCGATGATTATGATGATGAAGATGTGAAGATGTTTGATGCTAAAGAGGGAAACTTTGTTGAGAAAAAATGTGGTTTGGATGAAGATAACCCGATTTCAATATGTTCTGATGAGTATAGTGAGAGTGATGAAGAACACTCTGTTGGTTTTGGTGGTGATAATGAAGAAGAAGAAGAAAAAGAAGGTGATGATGTTAAAGAGGGAGTAAAAAAGGATGAAAGTAAAGGTAGTGGAGGAAATGGTGATATTGATGTCAAAGATGGGAGTAAATGTGGTTTGGAAGAAGATAACCCTATTACAATAGATACAGATGAAGACGGTGAAAGTGATGAAGAAGAAGAACACTCTGTTGGTTCTGATTCTGATAATGCTGCTGCTGCTGATGATGATGATGTTAACGAAGGAGTAAAAAGCGATGAAAGTGGAGGAATTGACGAGTTTGCTGATAAAGATTCTGATGAGAGTGAGGATGGTGATTCTAGTGATGAAGATTTTAAAGTTGAGGAGCTGAATGAGATTTCTGACAATGATGATGACAGTTCTTCTGACTCTCCTTATGTTGACGAGAAGAAGGAGAAGAAAAAGGATTATAGAAAAGATTTGAATATGGTGGAGAAGTTGATTAGAGAGGTGATGGATAGACAATGTGGAATTTCTGAGAAGAATAATGAGAATAGTCCATCTTCCACAAGTACTGATGAGTTGGAACATGCAGATCATGCTAGTGTTTCCTCTAGTACCTATGTGAATGGAGTATCAGAGGCGCTGAAAGCGAAGAGTGTTGATGTGGAAGTGAAAAACATCTCTGATGAAAGCGTAAATGTTGAAGCGAATGCCAAATCCAAAGAACAGAAGAAGGAATCAGATAAGCAGGGGGAAGAGAATGAAGTGCTATGGGATGAATTGGATGCAGCCCTTAGAGAATCAGAAGTGGTATCTAAGAATGAAATGTCAGAGGGGAAAAAAGCAAAAAGTGTAAACGTTGCTAAAGTCGAATTCAAATCCAAAGTCAAATACAATGCCAAACCTAATAACAGTGTCAATGTTGCCGACTGTGATAAAGGAAAAGAACATTATGTCAAAGGTTTAGATGTTGGAGGAGTTTCGTTGAATCAAACGAAGGAATCGGATAAAGAGAAAATGATGGAGAACAAAGGAAGGGACTATAAAGGTATAGCTAACATCCCTATTGTGAAGAAGAAGAAGGAATCTATTGATAACAATGGTTTGAATCAAAGCTTCAAAAGCTCACTTTTTATGCCGAAGGAGTTGGGTTTACTTGAACTGCTTGGTAAATGCCTCTGGGACGACAAGAATACTGTTAAGGATGATTCAATTGTGTTGGAGATGAAGGATATTGGCGTTGATCTGCAAGATATGCAGAAACCACCGACTTGTGTTAAGACACCTCATGAACGGATATGGAGCCTTAAAAAGGTGGAAAAGGTGCTAAAAACGAAGGAGCAGGAAGAGCAGGAACCGTTATGGGATGAATTGGATACATCCCTTAGAGAAGAAGATGCTGTATCAAAGATTGGAAATTTTAGGACAAATGAAGCTACACAAGAAACAAACGGAAATCCATCATCTCGTTGTGAACATGACACTTTGCTTGACGAACAGATTGGTATATATTGCAAATTATGTGGTGTGGTTATTACTGAGATCAAAGATATCTCACAACTAGTGTATGAAAGAGCTTCGAATGAAGGTTCTGGAAGAAGAGTTTCATTTGATGATTCGGTCAATCCCTCACTCTTTGATGGCTCTCAGTTCAATGTTTCTGATGGTGATTCAGATGATAATTACTTTCATAAAGAGGGCACAGTTTGGGACCTAATTCCTGGTGTGAAACAAAAATTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGAAATACCAATCTTCGCAAGTTAAAGAAAGCCGTTCCTTGCAGGGAGGGTGGCTGCATTATTTCCCATGCTCCTGGAACCGGAAAGACAAGGCTGACTGTAGTATTTCTCATGGCTTATTTGAAAGTATTCCCGAAATGCTTGCCGGTTATTGTTGCTCCTGCGAGTTTGTTACATACTTGGGAAGAAGAGTTCAAAAAATGGGACATTCCATTTCACAATTTGAACAATCCTGAGTTATCTGGTAAAGTGCATGATGATGTTGTTAATTTGCTTAATTGGTCTAATTCACAGCATAGTATGGATACAATGCGGATGGTGAAACTGATTTCGTGGTACAAAGAAAAGAGCATTCTTGGAATCAGTTACAGTTTGTACATGAAGCTAGCCGGAGGAGGAGGGGAATCTGACGATGAGAGAGGGGAGGATGAGAAAAAGAAAAAACAATCAAGTGTGGCGAAAAGAAAAGAAATTATGGGAAATGTTCTACGTCAAATTCCTGGTTTGTTGGTGCTTGACGAAGGACATACGCCAAGAAACAAAAAAAGTGGTATTTGGCAAGTTTTGTCGGAAGTTCAAACACGAAAGCGAATCATCCTTTCTGGAACTCCTTTCCAGAACAACTTCATGGAACTATACAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAATACGATGCCACACGAGCTGAAAATGTTTTGCCAGAAGAAGGACCATAAAAAAGCATCTAAAGAATGGATTTGGGAACCGGTTCCTGAGGAAAAGATCAAGCAGTTAAAATTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGCGCGATCCTTCAAAAGATGCTTCCCGGGTTAAGAAAATGTGTGCTGCGTTTGATGCCGGACAGCTTTCACAAGAAAATTCTTGAGGGGATTCAAAGTTCAAAGAATACACTGAGCTTTGATTTTAAGGAGACACGGGCATCGGTCCATCCGTCTCTTCTGCTCGAACGCGACCTTTTGGAAGAAGAGGAGTCTGTTCTCGACAAGGACCGGCTAGAGAAGCTTAGATTGAACCCCTACGCAGGCGTCAAAACAAAGTTTTTGGTGGAGTTTGTTAGACTTTGTGCTGCTTTAAATGAGAAAGTTCTCGTGTTCAGCCAATTCCTCAGTCCTTTACGCTTAATTATAGAGCAGTTATTAAACTCGTCTTTAAAATGGACGATGGAGAAGGAAGTCCTCTTCATTTATGGAGAGGTAAAGGACAGGAAGTCCTTAATCGATACCTTCAATGATGAAAACAGTCAAGCGAAGATTCTCCTTGCAACGACAAAAACTTGTTCCGAGGGAATCAGCTTGGTTGGAGCTTCAAGGGTTGTACTACTCGATGTCGTATGGAATCCCTCTGTTGAAAAACAGGCAATTAGTAGAGCTTATAGAATTGGGCAGAAGAAAGTTGTCTACACATACCATCTACTCACTGAAGGAACTAGAGAGTGCGATAAATTTCGCAAACAGGCCAAAAAGGACCGGTTATCTGAACTAGTTTTTTCGGCTAAAAATGACGATAATAATGAGGAGTTGAGGAGCTGTGCAGCGAACATTGAAGATAGAATTCTTGATGAGATGATTCGGCATGAAAAGCTCAAAGACATGTTTTTTGAGTGTTTGGTACAACCGAAGGAGCGAGAATTTGAGTCTTGGTATTGA 3831 0.3947 MAGLSNRTRSKNVPLFGSISHDVSFYSKPKRRKSDEDDKGMNYVSGRTRSKNVPLFGSLSVGVSCSKKRKVNEKPFVISIDDYDDEDVKMFDAKEGNFVEKKCGLDEDNPISICSDEYSESDEEHSVGFGGDNEEEEEKEGDDVKEGVKKDESKGSGGNGDIDVKDGSKCGLEEDNPITIDTDEDGESDEEEEHSVGSDSDNAAAADDDDVNEGVKSDESGGIDEFADKDSDESEDGDSSDEDFKVEELNEISDNDDDSSSDSPYVDEKKEKKKDYRKDLNMVEKLIREVMDRQCGISEKNNENSPSSTSTDELEHADHASVSSSTYVNGVSEALKAKSVDVEVKNISDESVNVEANAKSKEQKKESDKQGEENEVLWDELDAALRESEVVSKNEMSEGKKAKSVNVAKVEFKSKVKYNAKPNNSVNVADCDKGKEHYVKGLDVGGVSLNQTKESDKEKMMENKGRDYKGIANIPIVKKKKESIDNNGLNQSFKSSLFMPKELGLLELLGKCLWDDKNTVKDDSIVLEMKDIGVDLQDMQKPPTCVKTPHERIWSLKKVEKVLKTKEQEEQEPLWDELDTSLREEDAVSKIGNFRTNEATQETNGNPSSRCEHDTLLDEQIGIYCKLCGVVITEIKDISQLVYERASNEGSGRRVSFDDSVNPSLFDGSQFNVSDGDSDDNYFHKEGTVWDLIPGVKQKLYPHQQEGFEFIWKNLAGNTNLRKLKKAVPCREGGCIISHAPGTGKTRLTVVFLMAYLKVFPKCLPVIVAPASLLHTWEEEFKKWDIPFHNLNNPELSGKVHDDVVNLLNWSNSQHSMDTMRMVKLISWYKEKSILGISYSLYMKLAGGGGESDDERGEDEKKKKQSSVAKRKEIMGNVLRQIPGLLVLDEGHTPRNKKSGIWQVLSEVQTRKRIILSGTPFQNNFMELYNTLSLVKPSFPNTMPHELKMFCQKKDHKKASKEWIWEPVPEEKIKQLKLLMDPFVHVHKGAILQKMLPGLRKCVLRLMPDSFHKKILEGIQSSKNTLSFDFKETRASVHPSLLLERDLLEEEESVLDKDRLEKLRLNPYAGVKTKFLVEFVRLCAALNEKVLVFSQFLSPLRLIIEQLLNSSLKWTMEKEVLFIYGEVKDRKSLIDTFNDENSQAKILLATTKTCSEGISLVGASRVVLLDVVWNPSVEKQAISRAYRIGQKKVVYTYHLLTEGTRECDKFRKQAKKDRLSELVFSAKNDDNNEELRSCAANIEDRILDEMIRHEKLKDMFFECLVQPKEREFESWY* 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 292 327 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 142 159 - -
Mtr7g1068 1276 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 726 938 IPR014001 -
Mtr7g1068 1276 SMART helicmild6 1102 1189 IPR001650 -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 105 280 - -
Mtr7g1068 1276 Gene3D - 1047 1264 IPR027417 -
Mtr7g1068 1276 SMART ultradead3 696 946 IPR014001 -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 346 376 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 262 280 - -
Mtr7g1068 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 983 IPR027417 -
Mtr7g1068 1276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 298 1273 - -
Mtr7g1068 1276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 273 - -
Mtr7g1068 1276 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1078 1236 IPR001650 -
Mtr7g1068 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1229 IPR027417 -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 225 261 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 27 44 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 177 196 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 27 47 - -
Mtr7g1068 1276 Pfam SNF2-related domain 710 1021 IPR000330 GO:0005524|GO:0140658
Mtr7g1068 1276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 273 IPR044567 GO:0080188
Mtr7g1068 1276 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 298 1273 IPR044567 GO:0080188
Mtr7g1068 1276 Coils Coil 266 293 - -
Mtr7g1068 1276 CDD SF2_C_SNF 1072 1200 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 209 224 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 849 869 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 355 376 - -
Mtr7g1068 1276 MobiDBLite consensus disorder prediction 297 311 - -
Mtr7g1068 1276 Gene3D - 677 984 IPR038718 -
Mtr7g1068 1276 Coils Coil 344 364 - -
Mtr7g1068 1276 Pfam Helicase conserved C-terminal domain 1084 1189 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1068 Mtr-Chr7 23426584 23431257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1068 1088 1237 RAD5 or RAD16-like Gene Family AT5G43530 37.500 1.07e-13 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g1068 SNF2_N 6.9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1068 K10875 - gmx:100812737 830.476