Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1065 ATGGCTAGTGTTTCAAGCAGAACTCGAAGCAAGAATGTTCCATTGTTCCGTTGTCTTCCACTGAAATCGAAGCGGCTAAGAAAGAGTGATGAAGATGATATGGGTTTGGATCACTATGTTTCTCGTTGTAAGAAAATGAAGGTAAAAAGAGAAACTTTTGTTCTTCCTAAGAATGTTAAAGTTATTTCCATTGATGATGATGTGGGGATGTTTGATGCTAAAGATGGAAGCTTTGTTGAGAAAAAATGTGGTTTGGATGAAGATAATCCGATTTCAATAGGTTCTGATGAGTATGATGAGAGTGATGAAGAACATTCTGTTGCTTTTGGCGGTGATAATGAAGAAGAAGAAGAAGAAGAAAAAGAAGTTGTTGATGTTAAAGAGGAAGTAAAGACTGATGAAAGTAAAGGAAATGGTGAGTTTGATGATAAAGATAAAAACTTTGTTGATTTGGATGATTCTGCAGAGAGTGGTGATGATTCTGATTCTGTTACTGATGAGAGCGAGGATGATGATGATTCTGAAGATGAAGATTTTGATGTTGATAAGGAGGAGGAGAAGGAGAAGAAAAAAGGCGGTAGAAAATACTTGAATGTGGTCGAGGATTTGGTTAGAGAGGTGATGGATAAACAAAGTGGAATTTCTGGATTGAATGATGAGGAGATAAACGTTGAAAATAGTCCATCTTCCACAAAGAATGAGGAGATGAAGGATAAAAGTCCTTCTGTAAACAATGGTGAAATGGAGCATTCAGATTATGGTGAGGAGATGAGCGATAAAAATCCTTCTGTAAACAATGATGAAGTTGAGCATTCAGATTATGGTAGTGTAGCAATTTCTAATGCCTTTGAGAAGAAGAAGGATTCTTTTGTACACACTGATGAAGTGGAGCATTCAGATCGAATAAAGGGTTCTTCTTCTTCTTCAAACCAGAAGGAAATATCAGATATACAAAGGGCAGTGCAAAATGTCTCTGATGATGATGTAAATGTTAGTAAAGCAAAAGAAAGTGTGAATCTTCATGATGATCTTGATGTTGTAAATTATGACGATGTAAATGTTGGCAAAACCAAAGAAAGTGTGAATGTTCGTGATGATTTTGATGTTGTAAATGTTACCAAAGCCAAAGAGAGTGTGAATCTTTGCGGTGATATTGATGTTGCAAAAATCAAAGTCAAAGTTGAAGAGAATGCAGACCCTAATGAATGTGTGAAGGTTGCTGATTCTTATAAAGGGAAGGAAAAATATTTCGGAGGTTTAGATGTTGAAGGAGTTTCTTTGGTTGAAACAAAGGAAGAAGAGATGAAGAATGAATCAGTTGTGTTCGAGTTCAAGTATGACGCCTTTGATCGACGAGATAGGCAGCCACCACCGGTTATTGTGGAGACACCCCCATCGATATGGAGCTTTAAAAAGGTGGGAAAAGTGCCAAAGACCAAGGAGGATGAGGAGGAGGAAGTGTTATGGGATGAAATGGAGATGGCCCTAAGAGAATCAAAAGCTGTATACAAGAATGAAGCATCAGAGGCGAAAAAAGCAAAAAGTGTAAATTTTACCAAAGCCAAATTCAAATCCAATGTCAAATACAATGCCAAACCTAACGACAGTGTGAATGTTGCTGACTTTGATAAGGGAAAGAAAAAATATGTCGCAGGTTTAGGTGTTGGAGGAGTTTTATCGGCCCAAACAAAGCAAGAAAAGATGAAGGAATCAGAGAAACAGAAAATAATGGAGAACAAAGGAAGGGACTATAAAGGTATAACTAACATCCCTATTGAGAAGAACGAATCGGATAAAGAGAAAATGATGGAGAACAACGAAAGGGACTATGAAGGTATAGCTAATATCCCTATTGAGAAGAAGGAATCTATTGATAACCATGGTTTGAATCAAAGCGTCAAAAACCCACATTTTATGCCAAAGGAGTTGCGTTCACTCGAACTCCTTGCTCAATGCTATTGGGAAAGAAAGAATACCATGAACAAAGATTCAATTGTGCTGGAGGTCAATGAGGATTGCGTTGATCGGCAAGATACACAGCCACCACCAGTTTCTGTGGACACACCTCATGAACGGATATGGAGCCTCAAAAAGGCGGAAAAAGTTGAAAAGACTAAGGAGGAGGAAGAGAATGAAGTGATATGGGATGAATTGGAAACAGCCCTTAGAGAATCAGAAGCTGTATCCAAGATTGGAAATTTAGAGACAGATGAAGCTAGTGGAAGTCCATCATGTTGTAGTGAACACAACATTTTTCTAGATGAAGAGATCGGTGAATTTTGCAAATCATGTGGCGTGGTTATTACTGAGATCAAATATATCTCACCACTAGTGATTGATAGATTTCTCGGTGAAGGTTCAGGAAAAAAGGCATCATTTGATGGAGTAAATGTTTCACATGTTGATGGATCTCAGTTAAATGTTTCTGATAATGATTCGAAGACTAATTTCTCTCGCAATGAAGGCACAGTTTGGGACCTAATTCCAGATTTGAAACAAACTTTATATCCTCATCAAATAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGACACACTGAGCTTCAAAAGTTAAAGAATGACGATCTTTGCAGCGAAGGTGGATGTATCATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACCATGGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCCAAATGCTTGCCAATTATTGTCGCTCCTGCTAGTATACTACTAACTTGGGAGGATGAATTCAAGAAATGGGACATCGGAGTTCCATTTCACAATTTAAGCAATCCCGAGTTATCCGGTAAAGAGCATCCTGATGCGGTTGAAACGTTTGATATGTCTAATACACAGCATGATGTTCATGAAACGCGGATGGCAAAACTGATTTCGTGGTTCAAAGAAGCAAGCATTCTTGGAATCAGCTACAATTTGTTTGGGAAAAAATGCCAAGATAAGAAAAAGCACGAAAATGTGAAGGAGAGAGAAGGAAACTGTGATATGCGAAAGGTTCTACTTAATTCTCCTGGTTTGATAGTTCTAGACGAAGGACACACGCCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTTTCGAAGCTTCAAACGCAGAAGCGTATCATCCTTTCCGGAACTCCATTCCAGAACAACTTCTGGGAGCTTTACAGCACCTTAAGCTTGGTGAAACCTTCTTTTCCTAACACGATACCGCCTGAGCTTAAAAGTTTTTGCCAAAATCAGGGATATAAATCATCTAAAAAGTGCAATTGGGAACCAGTGTTGCTCAACAAAACAAGAGACCCTTCTGATGATCAGATCAAGAAGTTTAAATTGCTAATGGATCCCTTTGTGCATGTGCACAAAGGCGCAATCCTTGAAAGTAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCTGGTAGTTTGCAGAATGAAATTCTGAAGAGCATTAAACGTTCTCAAAACACAATATTTAACTTTGAACGTAAGGTAGCATTGACATCCGTCCATCCATCGCTTTTCCTTGAATGTGCTCTTTCAGAAGAAGAAAAATCTGCTCTCGACAAGGATCATCTGGAAAAGATTAGACTGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGGCTATGTGATGCTTTTCACGAGAAAGTTCTTGTGTTCAGCCAATTCCGTGCTCCTTTACAGTTAATTAAAGACCAATTAAACTCGGCTTTTAAATGGACTGAGGGAAAGGAAGTGCTGGTCATGTCTGGCGAGGATCCTCCAAAGGTCAAGCAATCCGTAATCCACAGCTTCAACGATGAAAATTGCCAAGCAAAGGTTCTACTTGCATCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTACTTCTGGATGTTGTGTGGAATCCTTCAGTCGAAAGACAAGCTATCAGCCGAGCGTATAGGATTGGTCAGAAGAAAGTGGTATACACATACCATCTGCTCGCTGAAGGGACTACCGAGGAAGAAAAATATGGTAAACAGGCCGAAAAAGACCGGTTATCTGAGCTCGTTTTTTCAGCAAAAAATGCCGCCAATAATGATGGTAAGTCCAAGAGCTCTGCTGTGAACTTCGAAGATAGAGTTCTTGATGAGATGACTAAGCATGAAAAGCTCAAAGGCATATTTGTTAAGTGCGTAGTATTGAGGAAAGAGCGAGATGTGGTCTGA 4230 0.3922 MASVSSRTRSKNVPLFRCLPLKSKRLRKSDEDDMGLDHYVSRCKKMKVKRETFVLPKNVKVISIDDDVGMFDAKDGSFVEKKCGLDEDNPISIGSDEYDESDEEHSVAFGGDNEEEEEEEKEVVDVKEEVKTDESKGNGEFDDKDKNFVDLDDSAESGDDSDSVTDESEDDDDSEDEDFDVDKEEEKEKKKGGRKYLNVVEDLVREVMDKQSGISGLNDEEINVENSPSSTKNEEMKDKSPSVNNGEMEHSDYGEEMSDKNPSVNNDEVEHSDYGSVAISNAFEKKKDSFVHTDEVEHSDRIKGSSSSSNQKEISDIQRAVQNVSDDDVNVSKAKESVNLHDDLDVVNYDDVNVGKTKESVNVRDDFDVVNVTKAKESVNLCGDIDVAKIKVKVEENADPNECVKVADSYKGKEKYFGGLDVEGVSLVETKEEEMKNESVVFEFKYDAFDRRDRQPPPVIVETPPSIWSFKKVGKVPKTKEDEEEEVLWDEMEMALRESKAVYKNEASEAKKAKSVNFTKAKFKSNVKYNAKPNDSVNVADFDKGKKKYVAGLGVGGVLSAQTKQEKMKESEKQKIMENKGRDYKGITNIPIEKNESDKEKMMENNERDYEGIANIPIEKKESIDNHGLNQSVKNPHFMPKELRSLELLAQCYWERKNTMNKDSIVLEVNEDCVDRQDTQPPPVSVDTPHERIWSLKKAEKVEKTKEEEENEVIWDELETALRESEAVSKIGNLETDEASGSPSCCSEHNIFLDEEIGEFCKSCGVVITEIKYISPLVIDRFLGEGSGKKASFDGVNVSHVDGSQLNVSDNDSKTNFSRNEGTVWDLIPDLKQTLYPHQIEGFEFIWKNLAGHTELQKLKNDDLCSEGGCIISHAPGTGKTRLTMVFLKAYLKAFPKCLPIIVAPASILLTWEDEFKKWDIGVPFHNLSNPELSGKEHPDAVETFDMSNTQHDVHETRMAKLISWFKEASILGISYNLFGKKCQDKKKHENVKEREGNCDMRKVLLNSPGLIVLDEGHTPRNQRSHIWKVFSKLQTQKRIILSGTPFQNNFWELYSTLSLVKPSFPNTIPPELKSFCQNQGYKSSKKCNWEPVLLNKTRDPSDDQIKKFKLLMDPFVHVHKGAILESKLPGLRDCLVTLKAGSLQNEILKSIKRSQNTIFNFERKVALTSVHPSLFLECALSEEEKSALDKDHLEKIRLNPHEGVKTKFLFEFVRLCDAFHEKVLVFSQFRAPLQLIKDQLNSAFKWTEGKEVLVMSGEDPPKVKQSVIHSFNDENCQAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTTEEEKYGKQAEKDRLSELVFSAKNAANNDGKSKSSAVNFEDRVLDEMTKHEKLKGIFVKCVVLRKERDVV* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 183 198 - -
Mtr7g1065 1409 SMART ultradead3 831 1076 IPR014001 -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 287 302 - -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 92 123 - -
Mtr7g1065 1409 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1212 1365 IPR001650 -
Mtr7g1065 1409 Pfam SNF2-related domain 858 1151 IPR000330 GO:0005524|GO:0140658
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 154 182 - -
Mtr7g1065 1409 CDD SF2_C_SNF 1206 1335 - -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 216 230 - -
Mtr7g1065 1409 Coils Coil 116 136 - -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 303 328 - -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 211 273 - -
Mtr7g1065 1409 Gene3D - 1132 1398 IPR027417 -
Mtr7g1065 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1077 IPR027417 -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 287 328 - -
Mtr7g1065 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1007 1366 IPR027417 -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 82 198 - -
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 231 267 - -
Mtr7g1065 1409 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 514 IPR044567 GO:0080188
Mtr7g1065 1409 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 509 1408 IPR044567 GO:0080188
Mtr7g1065 1409 MobiDBLite consensus disorder prediction 124 153 - -
Mtr7g1065 1409 SMART helicmild6 1235 1324 IPR001650 -
Mtr7g1065 1409 Pfam Helicase conserved C-terminal domain 1219 1324 IPR001650 -
Mtr7g1065 1409 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 861 1064 IPR014001 -
Mtr7g1065 1409 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 514 - -
Mtr7g1065 1409 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 509 1408 - -
Mtr7g1065 1409 Gene3D - 804 1099 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1065 Mtr-Chr7 23395480 23400975 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1065 1223 1382 RAD5 or RAD16-like Gene Family AT5G05130 39.130 1.61e-17 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g1065 SNF2_N 1.6e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1065 K10875 - gmx:100806733 804.668