Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1064 ATGGCTGGTATTTCTAGCAGAACTCGTAGCAAAAATGTTCCATTGTTTGGTTGTCTTCCTCCGAAATCGAAGCGGCGAAGAAAGAGTGATGAAGAACCTTTTGTTATTTTCATTGATGGAGATGATGATGGTGATGAAGATATGTATTTTGAATCTGCTTCTGATTCTAAGAATATGATGCTAAATGAAGAACCTTTTGTGGTTCCTGAAGGTGCCAAGGTAATTTCCATTGAACATGATGATTATGGTGGTCAAGATGAAGAAGGGTCAGTGCAGCAATGTGATGAAAACTTTGTTGGTGATGAAGACAACCCTATTTCAATACATTCAGATGAGTATGGTGAAAGTGATGAAGAACACTATGGTTCTGATTCTGATGCTGCTGATGCTGATGAAGTTAAAGATGGAGTGAAGAGTGATGCTGATGCTGATGTTAAAGATGTAGTAAAAATGGATGCTGATGATGATGCTGGTGATGTTAAAGACGGAGTAAAGAGTGATGAAGTTGGAGGGAACGGTGAGTTTTATGATAAAGATAAAAGCTTTATTGATTTGGGTGATTCTGATAAGAGTGATAGTGATGATTCTGATGAAAGTGAGGATTCTGGTTCAGATGAAAGTGAAGAAAATGAGACCAGTGATGAGGATTTTAGGGTTGATGAGATGAATGAGATTTTTGGCAATGATGATGACAATTCTTCTAGTTCCTCTTATTTGAATGAGAAGGAGGAGGAGGAGGAAGAAGAAGAGAAGAAGAAAACGGGTGAGCCGAAATACTATTATGCGGTGGAGGAGCTGGTGAGAGAGGTAATGGATAGACAAAGTGGAATTTCTGAGAGGAATGATGAGGAGGTGAATGTTGAGAATAGTCCATCTTCCACAAATATTGATGAGTTGGAGCATGAAGATCATGCTAGTGTTTCCTCCTGTACCATTGAGAAGAAGGGTAGTTCTTCTTCTAAGCTGAATGGAGTATCAGAGACACTGAAACCAAAGAGTGTAGAAGGGAAAGCGAAAAATCTCTCTGATGAAAGTGTGAATATAGGAGTGAATGCCAAATCAAAAAACAAATCCAAGGAAAATGTTGGTGATTCTGATCGAGGAAAATATCAATTTGTTAAAGGCTTAGATGTTGGAGGAATTTCATCAGTTCAAAAAAAGCAAGAAGAGATGAAGAATGAATCAATTGTGTTGGAGTTCAAGTATGATGCTGTTGATCGACGAGATAGGCAGCCACCACTGGTTCCTGTGGAGACACCCCCATCGATATGGAGCTTTAAAAAGGTGGGAAAAGTGCAAAAGACCAACGAGGATGAAGAGAATGATGTGTTACAGGATGAATTGGAGACAACCATTAGAGAATCAAAAGTTGTATCCAAGAATGAAACATCAGAGGGAAAAAAAACAAATTATGTCAAAGGTAAAGACAATGCCAAACCTAAGGACAGTGTGAATGTTGGAGGAAAAAAAAATTATGTCAAAGGTTTAGGTGTTGGTGGAGTTTCATCGGTTCAAACGAAGCAAGAAGAGATGAAGGAATCAAATAAAGAGAAAATGACGGAGAATAAAGGAAGGGATTATAAAGGTGTAGCTAACATCCCTATTGAGAAGAAGAAGAAGAAGGAATCTATTGATAACAGTTGTTTGAATCAAAGCGTCAAAAGCCCACATTTTACGCCAAAGGAGTTGCGTTCACTCGAACTCCTTGCTCAATGCTATTGGGAAAGAAAGAATACCATGAACAAAGATTCAATTGTGTTGGAGGTCAATGAAGATTGCGTTGATCGGCAAGATACACAGCCACCACCAGTTTCTGTGGACACGCCTCATGAACGGATATGGAGCCTCAAAAAGGTGGAAAAAGTTCAGAAGACTAAGGAGGAGGAAGAGAATGAAGTGTTATGGGATGAATTGGAAACGACCCTTAGAGAATTAGAAGCTGTATGCAAGATTGGAAATTTAGAGACAGATGAAGCTAGCGGAAGTCCATCATCTTGTTGTGAACACAACATTTTTCTCGATGAAGAGATTGGTGAATATTGCAAATCATGTGGCGTGGTTATTACCGAGACCAAATATATCTCACCACTAGTGATTGATAGATTTCCCCATGAAGGTTATAGAAAGAGAGCTTCATTTGATGATTCAGTAAATGCCTCGCTCTTTGATGGCTCTAAGTTCAATGTTTCTGATGGTGAATCAGAGACTAATTTCTCTCATAATGAAGGCACTGTTTGGGACCTAATTCCTGATGATGTGAAAGAAACCTCGTATCCTCATCAAAAAGAAGGCTTTGAGTTCATTTGGAAAAACTTGACAGGAAACATCGATCTTCACAAGTTGAGTAAAACCGATCCTCGCAGGGAGGGTGGCTGCATTATCTCCCATGCTCCCGGAACCGGAAAGACAAGGTTGACTATAATGTTTCTCATGTCATATCTGAAAGTGTTTCCTAAATGCTTGCCCGTTATTGTTGCACCTGCGAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACGTTGGAGTTCCATTTCACAATTTGAACAATCTTGAGTTATCCGGTAAAGAGCATGGTGATGCCGTTAATTTGCATAATTGGTCTAATGCACGGCCTAGTAAGGATACAACGCGGATGGTGAAACTGATTTCGTGGTACAAAGAAAGTAGCATTCTCGGGATCAGTTACAGTTTGTACGAGAAGCTAGCTGGAGGAGGGGGGGAATGTGATGATGAAGATGAGAAAAAGAGAAAACAAGCAAGAGGAGTGCGATCCAAAAATAAGAGAGAGAAAAAATACGCAAGTACAGAGAAGAGAAATGGTTATATGAGAAAGGTTTTACTTGAAGCTCCTGGTTTGTTGGTTTTCGATGAAGGACATACACCGAGAAGTGAAAAAAGTCTTCTTTGGAATATGTTGTTGGAGATCCAAACAAACAAACGGATTATACTTTCTGGAACACCTTTCCAGAACAATTTCATGGAACTGTACAACACTCTGAGCTTAATGAAGCCTTCATTTCCTAATACGATATCCCTCAAGCTAAAAAACTTTTGCCAGAAGCCGAAACGTAAAAAAACATCGAAAAAATCCAGTTGGGAACTGGTTTCTGGGAATTCTTCTGATAATGAGATCAAGCAGTTAAAGTTGCTTATGGATCCCTTTGTTCATGTTCACAAAGGTGCGATCCTTCAAAAGAAGCTTCCCGGGTTAAGAAATTGTATTCTGACTTTGAAGCCGGACAGTTTTCAGAAGCAAACTCTTGAGAGCATTAAAAGTTCTCACAACATTTTTATCTCTGAGCCTAAGGTGACAATGGCATCTGTCCATCCATCTCTTTTGCTCGAATGCAAACTTTTGGAAGAAGAGGAATCTGTTCTCGACAAGGACCGGCTAGAAAAGCTTCGATTGAATCCAAATGGAGGTGTGAAAACCAAATTCTTGGTGGAGTTTGTTAGGCTTTGTGATGCTGTTAACGAGAAGGTTCTTGTGTTCAGTGAATTACTCGGTCCTTTACGCTTAATTAAAGACCAATTAAGCTCTTCTCTTAATTGGACCGACAAGGAAATTCTGTACATGGATGGCGTGGTTAGATTAAAAGAAAAGCAGGAGCTAATCCATAGCTTCAACGATGCAAACTGCCAAGCAAAGATTCTACTTGCATCGACAAGAGCTTGTTCCGAGGGAATTAGCTTAGTCGGAGCATCAAGGGTTGTGCTGCTCGATGTTGTATGGAATCCTTCGGTCGAAAGGCAGGCTGTCAGCAGAGCCTATAGGATTGGACAGAAGAGAGTTGTCTACACATACCATCTGCTCACTGAAGGGACCACAGAACACCTAAAATATTTCAAACAGTCCGAAAAGGACCGGTTATCTGAGCTCGTCTTTTCGGATAAACACATTGATAATGATGAGTCCAAGAGTTGTGCTGTGGACTTTGATGATAAAGTTCTTGATCTGATGCTTCAGCACGAAAAACTTAAAGGCATGTTTGTTAAGTGCTTGGTTCAGCCGAAGGAGCGAGATTTTGTCGAGAGTTTCGGCTATTGA 4056 0.4001 MAGISSRTRSKNVPLFGCLPPKSKRRRKSDEEPFVIFIDGDDDGDEDMYFESASDSKNMMLNEEPFVVPEGAKVISIEHDDYGGQDEEGSVQQCDENFVGDEDNPISIHSDEYGESDEEHYGSDSDAADADEVKDGVKSDADADVKDVVKMDADDDAGDVKDGVKSDEVGGNGEFYDKDKSFIDLGDSDKSDSDDSDESEDSGSDESEENETSDEDFRVDEMNEIFGNDDDNSSSSSYLNEKEEEEEEEEKKKTGEPKYYYAVEELVREVMDRQSGISERNDEEVNVENSPSSTNIDELEHEDHASVSSCTIEKKGSSSSKLNGVSETLKPKSVEGKAKNLSDESVNIGVNAKSKNKSKENVGDSDRGKYQFVKGLDVGGISSVQKKQEEMKNESIVLEFKYDAVDRRDRQPPLVPVETPPSIWSFKKVGKVQKTNEDEENDVLQDELETTIRESKVVSKNETSEGKKTNYVKGKDNAKPKDSVNVGGKKNYVKGLGVGGVSSVQTKQEEMKESNKEKMTENKGRDYKGVANIPIEKKKKKESIDNSCLNQSVKSPHFTPKELRSLELLAQCYWERKNTMNKDSIVLEVNEDCVDRQDTQPPPVSVDTPHERIWSLKKVEKVQKTKEEEENEVLWDELETTLRELEAVCKIGNLETDEASGSPSSCCEHNIFLDEEIGEYCKSCGVVITETKYISPLVIDRFPHEGYRKRASFDDSVNASLFDGSKFNVSDGESETNFSHNEGTVWDLIPDDVKETSYPHQKEGFEFIWKNLTGNIDLHKLSKTDPRREGGCIISHAPGTGKTRLTIMFLMSYLKVFPKCLPVIVAPASLLLTWEDEFKKWDVGVPFHNLNNLELSGKEHGDAVNLHNWSNARPSKDTTRMVKLISWYKESSILGISYSLYEKLAGGGGECDDEDEKKRKQARGVRSKNKREKKYASTEKRNGYMRKVLLEAPGLLVFDEGHTPRSEKSLLWNMLLEIQTNKRIILSGTPFQNNFMELYNTLSLMKPSFPNTISLKLKNFCQKPKRKKTSKKSSWELVSGNSSDNEIKQLKLLMDPFVHVHKGAILQKKLPGLRNCILTLKPDSFQKQTLESIKSSHNIFISEPKVTMASVHPSLLLECKLLEEEESVLDKDRLEKLRLNPNGGVKTKFLVEFVRLCDAVNEKVLVFSELLGPLRLIKDQLSSSLNWTDKEILYMDGVVRLKEKQELIHSFNDANCQAKILLASTRACSEGISLVGASRVVLLDVVWNPSVERQAVSRAYRIGQKRVVYTYHLLTEGTTEHLKYFKQSEKDRLSELVFSDKHIDNDESKSCAVDFDDKVLDLMLQHEKLKGMFVKCLVQPKERDFVESFGY* 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1064 1351 Pfam SNF2-related domain 771 1101 IPR000330 GO:0005524|GO:0140658
Mtr7g1064 1351 Gene3D - 728 1058 IPR038718 -
Mtr7g1064 1351 CDD SF2_C_SNF 1146 1274 - -
Mtr7g1064 1351 Coils Coil 434 454 - -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 295 309 - -
Mtr7g1064 1351 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 463 1350 IPR044567 GO:0080188
Mtr7g1064 1351 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 465 IPR044567 GO:0080188
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 454 490 - -
Mtr7g1064 1351 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 783 1008 IPR014001 -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 105 189 - -
Mtr7g1064 1351 Pfam Helicase conserved C-terminal domain 1157 1263 IPR001650 -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 907 936 - -
Mtr7g1064 1351 SMART helicmild6 1179 1263 IPR001650 -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 272 286 - -
Mtr7g1064 1351 SMART ultradead3 753 1016 IPR014001 -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 310 327 - -
Mtr7g1064 1351 Gene3D - 1071 1336 IPR027417 -
Mtr7g1064 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 953 1303 IPR027417 -
Mtr7g1064 1351 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1152 1304 IPR001650 -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 907 922 - -
Mtr7g1064 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 1039 IPR027417 -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 454 483 - -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 79 260 - -
Mtr7g1064 1351 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 465 - -
Mtr7g1064 1351 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 463 1350 - -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 1 50 - -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 190 218 - -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 236 260 - -
Mtr7g1064 1351 MobiDBLite consensus disorder prediction 272 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1064 Mtr-Chr7 23386236 23392025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1064 1162 1303 RAD5 or RAD16-like Gene Family AT5G43530 35.211 1.69e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g1064 SNF2_N 1.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1064 K10875 - gmx:100806733 828.55