Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1062 ATGGAGGAGTTAGCGAGAGAGGCGAACAATAAACACAGTGAATCCTCTTATGTTGATGTTGATGTTGATGTTGATGATGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACAAAGGGGAGGATTTGAGTAAGATTTGGGAAGAATTTTCCAATGGGTTACTGGAGATGGTGAGAGAGGTGGAGGATCAAAAATGTGTAATTTCTGAGACGAATAATGTGGAGGTAAACATTGAAAATAGTCCTTCTTCTGTTTGCAATGATGTATCAGAACATGCAGATCATTCCAATTTAATAACCTTTGAGAAAAAGGATTATTTTGATCCAGTGAAGGGTTGTTCTTCTTCCAAAGGGAATGGAGAATCGAAGAAACGTGAATCAAAGAGTGTAGGCATAAAAATGCAAAATGTCAGTAATAAATATGATTTTCAATTTGTTGCTGATCAACCTATAAGTTTTGTTCATTCTAAGGTTCACAAGGGTGAGTCAAATAATGCCAATGCCAAAGCAAAATCCAAAGATGATGCTAAAGTTTATGAGAATGTGAATGTGAATGTTGGTGATTCTGATGAAGGAAAACAGAAACATGTCAAAGGTTTAGGTGTTGGAGGAGTTTCTTCCCCTCAAGCAAAACAAGAAAAGATGAGGGATTCAGATAAACCAAAAATGACAGAGAATAAAGGGGGGGACTGTAAAAGCAGATTTAGGATCCGTAATGGTGAGAAGAAGGAATCTATGAACAACAATGGTTTGACTAAAATGTTTGTGCCGAAGGAGCTGTGTTTAGCTAAACTCCTTGCAGAATGCTTTTGGGGCAACAAGAATACAATGAAGAAGGATTCAATTGTGTTGGAGGTGAAGGATGGCAACGATGATTGGCGAGATAGAGATACACGGTCACCGCCGGTTTGTGTTGAGACACCTCCACAGATATGGAGCCTTAAAAAGGTGGAAGAAGTGCAAAAGACCAAAGAGGAGTTGGAGCAGGAACCGTTATGGGATCAAATGGATACAGCCCTTAGAGAATCAGAAGCTGAATCCATGATTGGAAATTTAGGGACAAATGACATGAGAAATCCATCCACTCTTTGTGAACACGACACTTGTTTCGACGATCAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTGTCACTGAGATCAAATATGTCTCACAACTGGTGATGGATAGATTTCCCTCTGAAGGTTCTGGAAAAAGGGCTTCATTTGATGATTCAGTAAATGTCTCACACTTTGATGGCTCTCAGTTCAATGTTTCTGATGGTGAACCAGAGACTAATTTCTCTCATAATGAAGGCACTGTTTGGGACCTAATTCCTGATGATGTGAAAGAAACCTTGTATCCTCATCAACTAGAAGGCTTTGAGTTCATTTGGAAAAACTTGACAGGACACATCGATCTTCACAAGTTAAGTAAAACCAATCCTCGCAGGGAGGGTGGCTGCATTATCTCCCATGCTCCCGGAACCGGAAAGACAAGGTTGACTATAATGTTTCTCATGTCATATCTGAAAGTGTTTCCTAAATGCTTGCCGGTTATTGTTGCTCCTGCGAGTTTGTTACTTACTTGGGAAGATGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCACAATTTGAACAATCTCAAATTATCCGGTAAAGAGCATGATGATGCTGTTGATTTTGTTAATTGGTCTAATAAGCGGCTTAGTAAGGATACAACACGGATGGTGAAACTGATTTCTTGGTACAAAGAAAAGAGCATTCTGGGAATCAGTTACAATTTGTACGAGAAGCTAGCCGGAGAAGGGGGATCCAAACGCAGGAAAAAGAGAAAACATACAAATGTGGAGAAGAGGAAACAAAATGGCGATATGAGAAACGCTTTACTTGAATCTCCTGGTTTGTTAGTGCTAGATGAAGGACACATACCGAGAAATGAAAGAAGTCTTATTTGGAAGGTATTGTCGAAAATTCAAACCCGCAAGCGGATCATCCTTTCTGGAACTCCTTTCCAGAACAATTTCTTGGAACTGTACAACATTTTGAGCCTAGTGAAGCCTTCGTTTCCTAACACGATACCGCATGAGCTGAAAAAGTTTTGCCTGAAGCAGGAATATAAAAAAGTATCTGAAGAATGGAGTTGGGAAGCCGATTATGGCAACTCAACCTGTAATCCTTCCGACCATAAGATCAAACAGTTAAAATTGCTTATGGATCCATTTGTTCATGTTCATAAAGGTGCGATCCTTCAAAAGAAGCTCCCTGGGATAAGAAATTGTAAGCTGACTTTGAAGCCGGACAGTTTGCAGAAGCAAATTCTTGACAGCATTCAAAGTCGTCAGAACGCGTTGATCTTTGAGCGTAAGCTGACAATGGCATCAATCCATCCGTATCTTTTCCTCGAATGCGATCTTTTGAAAGAAGAGGAATCTGTTGTCGACAAGGACCAGCTAGAAAAGCTTCGATTGAATCCATATGTAGGTGTGAAAACCAAATTTCTGGTTGAGTTTGTTAGACTTTGTGATGCTGTTAAAGAGAAAGTTCTTGTGTTCAGCCAATTAATCCGTCCCTTATGCTTAATCATAGACCAATTATCGCACATTTCTTTAAACTGGACAGTGGGGAAGGAAATCCTCTTCATGCATGGAGAGGTTAGTCTAAAGGACAGACAATCCTTAATCCATAGCTTCAATGATGCTAACAGCCAAGCAAAGATCCTCCTTGCATCGACAAATGCTTGTTCCGAGGGAATTAGCTTAGTCGGAGCATCAAGGGTTGTGCTGCTCGATGTTGTATGGAATCCATCAGTCGATCGACAGGCTATCAGTAGAGCATATAGGATTGGCCAAAAGAAGGTTGTATACACTTACCATCTGCTCACCGAAGGGACTGCTGAGAAAATAAAACATCGCAAACAGGCCGAAAAGCACAGGTTATCTGAACTGGTTTTTTCGGCTAAAAATGCTGATAAAGATAAGTCCAAGAGTTGTGCTGTTAACTTTGAAGATAGAATTCTTGATCAGTTGAAACAGCACGAAACGTTCAAAGACGTGTTTGTTACAGTTCAGTCAAAGGAGCGAGATTTGGTTGAGAGTTTCGGCTCTTGA 3114 0.4056 MEELAREANNKHSESSYVDVDVDVDDGEEEEEEEEEEDKGEDLSKIWEEFSNGLLEMVREVEDQKCVISETNNVEVNIENSPSSVCNDVSEHADHSNLITFEKKDYFDPVKGCSSSKGNGESKKRESKSVGIKMQNVSNKYDFQFVADQPISFVHSKVHKGESNNANAKAKSKDDAKVYENVNVNVGDSDEGKQKHVKGLGVGGVSSPQAKQEKMRDSDKPKMTENKGGDCKSRFRIRNGEKKESMNNNGLTKMFVPKELCLAKLLAECFWGNKNTMKKDSIVLEVKDGNDDWRDRDTRSPPVCVETPPQIWSLKKVEEVQKTKEELEQEPLWDQMDTALRESEAESMIGNLGTNDMRNPSTLCEHDTCFDDQIGVYCRWCGVVVTEIKYVSQLVMDRFPSEGSGKRASFDDSVNVSHFDGSQFNVSDGEPETNFSHNEGTVWDLIPDDVKETLYPHQLEGFEFIWKNLTGHIDLHKLSKTNPRREGGCIISHAPGTGKTRLTIMFLMSYLKVFPKCLPVIVAPASLLLTWEDEFKKWDIGVPFHNLNNLKLSGKEHDDAVDFVNWSNKRLSKDTTRMVKLISWYKEKSILGISYNLYEKLAGEGGSKRRKKRKHTNVEKRKQNGDMRNALLESPGLLVLDEGHIPRNERSLIWKVLSKIQTRKRIILSGTPFQNNFLELYNILSLVKPSFPNTIPHELKKFCLKQEYKKVSEEWSWEADYGNSTCNPSDHKIKQLKLLMDPFVHVHKGAILQKKLPGIRNCKLTLKPDSLQKQILDSIQSRQNALIFERKLTMASIHPYLFLECDLLKEEESVVDKDQLEKLRLNPYVGVKTKFLVEFVRLCDAVKEKVLVFSQLIRPLCLIIDQLSHISLNWTVGKEILFMHGEVSLKDRQSLIHSFNDANSQAKILLASTNACSEGISLVGASRVVLLDVVWNPSVDRQAISRAYRIGQKKVVYTYHLLTEGTAEKIKHRKQAEKHRLSELVFSAKNADKDKSKSCAVNFEDRILDQLKQHETFKDVFVTVQSKERDLVESFGS* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1062 1037 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 838 992 IPR001650 -
Mtr7g1062 1037 Gene3D - 428 729 IPR038718 -
Mtr7g1062 1037 SMART helicmild6 865 951 IPR001650 -
Mtr7g1062 1037 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 480 690 IPR014001 -
Mtr7g1062 1037 CDD SF2_C_SNF 829 962 - -
Mtr7g1062 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 990 IPR027417 -
Mtr7g1062 1037 MobiDBLite consensus disorder prediction 1 19 - -
Mtr7g1062 1037 MobiDBLite consensus disorder prediction 20 42 - -
Mtr7g1062 1037 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1036 IPR044567 GO:0080188
Mtr7g1062 1037 MobiDBLite consensus disorder prediction 186 233 - -
Mtr7g1062 1037 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 19 1036 - -
Mtr7g1062 1037 MobiDBLite consensus disorder prediction 212 233 - -
Mtr7g1062 1037 Pfam Helicase conserved C-terminal domain 843 951 IPR001650 -
Mtr7g1062 1037 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 719 IPR027417 -
Mtr7g1062 1037 SMART ultradead3 450 698 IPR014001 -
Mtr7g1062 1037 MobiDBLite consensus disorder prediction 1 44 - -
Mtr7g1062 1037 Pfam SNF2-related domain 468 778 IPR000330 GO:0005524|GO:0140658
Mtr7g1062 1037 Gene3D - 757 1031 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1062 Mtr-Chr7 23292265 23296375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1062 848 981 RAD5 or RAD16-like Gene Family AT5G43530 38.060 1.85e-15 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g1062 SNF2_N 1.9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1062 K10875 - gmx:100806733 856.284