Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1026 ATGAACCTGAAATACGAACAGAGGCTCCAAGTCGCCGCTAAAATAATGCTCGACGACGACGAAAGTTCCGGCGACGCAGCGCCGAGTGAAGAAGAGCTTGGGATTAAAGCAACACTGAAACCTCATCAAGTGGATGGAATTTCATGGCTTATAAGGAGATATAAACTTGGCGTCAACGTTGTTCTTGGGGATGAGATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACACGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACGGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAAGCAGCCAACACATAATGTCATGTTGCCATTCGATGTGCTGTTAACATCATATGACATTGCACTAATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATCGATGAAGCGCAAAGGCTTAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGCATTTTTGCATGCCATCTGTTTTTGGGACACTAGATCAGTTCCTTTCTACATTTAAGGACATCAGTGATCTTACCTCAGTTCATGATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTAAGAAGTGTATTGGCTGCGTTTATGCTCCGACGAACTAAATCAAAGCTTATGGAGTGTGGAAGTTTGGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCACTTGTTAGCCTGCAGAAAAAGGTCTGCATGTCAATACTGAGGAAGGAACTTCCGAAGCTAGTCGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGATACAACTAAGGAAAGCATGCAGCCATCCTTATCTTTTTCCGGGTATTGAACCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTGATTCTGGACCAACTTCTTCGAAAGCTACATCATAATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTAAGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGCTAACCAAAACGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTATGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTAAATGTTACAGGCGATAATATTGTGGAACAAGAAGATAAACAATTATCTTCAGTCGGAACTGGTGATTTGAAATCCATCATAGTTGGATTACGTATGTTTGATCCCAATGAAATCAATGATGGAAAAGACAAGGACATGGATTTAACAGAAATTAATGCAATGGCTGACAAAGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATTTGATGTTAAGGAAAGAGGTTCTGCTTCTTTCTCTTGTGATCTTGATCTTGATGAGGCATCATATCTTGCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGACTCAGTTATTGACTTGAAAAGCAGAAGGAACTTGGATGAGGAAAAGAGTCAAAAACTTGAGACTGCAAGGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGCTGGATACCAGTCGTTGAATGTTGAAGACCCTATTAGCCCACCAGATGGGGATACCATATTAGATGCTGGTTCTGTTCATTTTGTCTATGGAGATTGTACAGCCCCTACAAACGTTCCTTCAACTGAACCTGTTTTAATATTCAGCTGTGTTGACACCTCCGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTATCTAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTATGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGACGGTAATGATCAAAATTTGGACGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCCTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAGGCAGCGTTCTCAGCTGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGCTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACGTATTATTACCGAAGATAACGTTAAGGATCCACGCTGTTTCCAGACACAAGAGGGATAGTTCAGATGGAAAAAAGAGCTTGAAGATACGTTTCCCTATTACCCTATACGTGCACATGTATGTATATAATATAATTCCGGACAACACAAGTGTAATGAATTGCAAATCCTTTGAAGTGTTAGAACATAACTAG 2790 0.4082 MNLKYEQRLQVAAKIMLDDDESSGDAAPSEEELGIKATLKPHQVDGISWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRMKTHEHVTKQPTHNVMLPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDISDLTSVHDSPKVKERLQILRSVLAAFMLRRTKSKLMECGSLVLPPLTETTVLVPLVSLQKKVCMSILRKELPKLVALSSGTSNHQSLQNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHRVLLFAQMTHTLDILQDYLELSKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEANQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNIVEQEDKQLSSVGTGDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGFDVKERGSASFSCDLDLDEASYLAWVKKFEEVSKSSCDSVIDLKSRRNLDEEKSQKLETARKKAEEKKLSKWNAAGYQSLNVEDPISPPDGDTILDAGSVHFVYGDCTAPTNVPSTEPVLIFSCVDTSGRWGHGGMFDALSKLSSSISDAYERAYEHGDLHLGDLHLIRLEDDGNDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNVLLPKITLRIHAVSRHKRDSSDGKKSLKIRFPITLYVHMYVYNIIPDNTSVMNCKSFEVLEHN* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1026 929 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 2 867 - -
Mtr7g1026 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 537 IPR001650 -
Mtr7g1026 929 SMART helicmild6 395 490 IPR001650 -
Mtr7g1026 929 SMART ultradead3 35 235 IPR014001 -
Mtr7g1026 929 Pfam SNF2-related domain 57 345 IPR000330 GO:0005524|GO:0140658
Mtr7g1026 929 Coils Coil 653 673 - -
Mtr7g1026 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Mtr7g1026 929 Gene3D - 284 591 IPR027417 -
Mtr7g1026 929 PANTHER HELICASE CHR10-RELATED 2 867 - -
Mtr7g1026 929 Gene3D Leucine Aminopeptidase, subunit E, domain 1 702 869 IPR043472 -
Mtr7g1026 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 272 IPR027417 -
Mtr7g1026 929 CDD Macro_Poa1p-like_SNF2 705 863 - -
Mtr7g1026 929 Gene3D - 11 283 IPR038718 -
Mtr7g1026 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 547 IPR027417 -
Mtr7g1026 929 CDD SF2_C_SNF 358 501 - -
Mtr7g1026 929 SUPERFAMILY Macro domain-like 706 868 IPR043472 -
Mtr7g1026 929 Pfam Helicase conserved C-terminal domain 366 490 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1026 Mtr-Chr7 21958218 21966548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g1026 364 520 RAD5 or RAD16-like Gene Family AT5G22750 33.758 7.62e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g1026 SNF2_N 2.4e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1026 K20092 - gmx:100797182 1365.9