Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g1020 ATGGAGTTAGATGATAATGAAGTCGATTTACCCTCACCGTCAAAAGACGGTAATGATCCAAAAAATACGTCAGTGGAATGGATTCCTGCGTGTGAGGATGAACTCAAACCCGTGATTAGCAAGGTATTTGATACTTTAGTAGAAGGAGGTGATTTTTATAAAGCTTATGCTTATGTTGCTGGTTTTAGTGTGCGTAATTCGACTAAAACGAAAGATAAAGATGGTGTCAAATGGAAATATTTTCTTTGCTCAAAAGAGGGTTTTAAAGAGGAAAAAAAGGTTGACAAGCCACAACTGCTTATTGCTGAAAATAATTTGTCTAAAAGTAGAAAAAGAAAATTGACGCGGGAGGGATGTAAAGCAAGACTTGTTTTGAAGAGAACTATTGATGGTAAATATGAAGTCTCAAACTTTTATGAAGGTCATTCACATGGGCTAGTCTCACCTTCAAAGAGACAATTCCTAAGGTCAGCAAGAAATGTAACTAGTGTTCATAAGAATATATTGTTTTCCTGCAATAGAGATAATGTGGGGACTTCAAAAAGTTATCAAATAATGAAGGACCAGGTCGGAAGTTATGAAAATATAGGATGCACACAAAGAGATTTGCAAAACTATTCAAGAAATTTGAAAGAATTGATCAAAGACTCTGATGCAGATATGTTCATTGATAATTTTAGAAGAAAACGAGAGATAAACCCTTCATTCTTCTATGATTATGAAGCTGACAATGAAGGGAAGTTGAAACATGTGTTTTGGGCTGATGGAATTTGTCGAAAAAATTACTCTTTGTTTGGAAATGTGGTTTCATTTGACACAACATACCGCACAAACAAGTATTTTATGATTTTTTCACCATTCACTGGCATAAATCATCATCGTCAAAGCATAACATTTGGGGCTGCTCTTTTGAAAAATGAAAAAGAAGAATCGTTTGTTTGGTTGTTTGAGACATTTTTGAAAGCAATGGGGGGACATAAACCTGTTATGATAATAACAGATCAAGATGGGGGTATGAAGAATGCAATAGGAGCGGTTTTAAAAGGGTCGTCTCATAGATTTTGCATGTGCCATATTCTAAAAAAACTTTCAGAAAAGGTGGGTAGTTCCATGGATGAGAATAGTGGTTTTAATGATCGTTTCAAGTCATGTGTCTGGAACTCAGAGTCCTTGGAAGAATTTGATTTGGAATGGAATAATATTATTAGTGATTACAACTTGGAAGGAAATGGATGGCTTTCTACAATGTATGATCTAAGAAGCATGTGGATACCTGCATATTTTAAAGATACATTTATGGCTGGAATTTTGAGAACAACCTCAAGATCAGAGAGTGAAAATTCATTCTTTGGCAACTACTTGAATCATAACTTAACTTTAGTGGAATTCTGGGTGCGATTTGATTCTGCTTTAGCAGCACAAAGACACAAAGAACTTTTTGCTGATAATAATACACTTCATTCTAATCCATAA 1473 0.3476 MELDDNEVDLPSPSKDGNDPKNTSVEWIPACEDELKPVISKVFDTLVEGGDFYKAYAYVAGFSVRNSTKTKDKDGVKWKYFLCSKEGFKEEKKVDKPQLLIAENNLSKSRKRKLTREGCKARLVLKRTIDGKYEVSNFYEGHSHGLVSPSKRQFLRSARNVTSVHKNILFSCNRDNVGTSKSYQIMKDQVGSYENIGCTQRDLQNYSRNLKELIKDSDADMFIDNFRRKREINPSFFYDYEADNEGKLKHVFWADGICRKNYSLFGNVVSFDTTYRTNKYFMIFSPFTGINHHRQSITFGAALLKNEKEESFVWLFETFLKAMGGHKPVMIITDQDGGMKNAIGAVLKGSSHRFCMCHILKKLSEKVGSSMDENSGFNDRFKSCVWNSESLEEFDLEWNNIISDYNLEGNGWLSTMYDLRSMWIPAYFKDTFMAGILRTTSRSESENSFFGNYLNHNLTLVEFWVRFDSALAAQRHKELFADNNTLHSNP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g1020 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 23 166 - -
Mtr7g1020 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 214 486 - -
Mtr7g1020 490 Coils Coil 196 216 - -
Mtr7g1020 490 Pfam MULE transposase domain 268 362 IPR018289 -
Mtr7g1020 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 214 486 IPR031052 GO:0006355
Mtr7g1020 490 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 166 IPR031052 GO:0006355
Mtr7g1020 490 MobiDBLite consensus disorder prediction 1 23 - -
Mtr7g1020 490 Pfam FAR1 DNA-binding domain 51 147 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g1020 Mtr-Chr7 21843246 21844718 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr7g1020 FAR1 2.9e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g1020 - - cqi:110709295 534.643