Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0992 ATGAACCTGAAATACGAACAGAGGCTCCAAGTCGCCGCTAAAATAATACTCGACGACGACGAAAGTTCCGGCGACGCAGCGCCGAGTGAAGAAGAGCTTGGGATTAAAGCAACACTGAAACCTCATCAAGTGGATGGAATTTCATGGCTTATAAGGAGATATAAACTTGGTGTCAACGTTGTTCTTGGGGATGAGATGGGATTGGGCAAGACATTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGCCAGTTGTCACACGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTAGGAAAACACATGAACATGTAACAAAGCAGCCAACACATAATGTCATGTTGCCATTCGATGTGCTGTTAACATCATATGACATTGCACTAATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAGTCATCGATGAAGCGCAAAGGCTTAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACTGGCACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGCATTTTTGCATGCCATCTGTTTTTGGGACACTAGATCAGTTTCTTTCTACATTTAAGGACATCAGTGATCTTACCTCAGGTGAGGGCTGCCCAAACTTTATAAACACTACACATGCCATATCTCTAGGCAACGTGGGGCTAAATCCACCCCTTCACAGTCAACACAATGAAGATTTTGGAGGTGGAAATGAAGGCATTCCTAATTCCGCAATTAGGTGGCTGGGGGCGGATCGCAATGAAGTTGGAATTTCTAACAACCCTTCGTGCTCGGGTCCAATGAGCTCGGAGCGTGGATTATGCCTGTACCCCAACATCAGATCTAGGATAGGCTCTAATATCATCTTAAAATTGTGGAATTTCAAACAGTTAGTATTAGTTTATGGAACATCAAATCACCAATCACTACAGAATACTGTGATACAACTAAGGAAAGCATGCAGCCATCCTTATCTTTTTCCGGGTATTGAACCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTGCTGATTCTGGACCAACTTCTTCGAAAGCTACATCATAATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATACGGGCTTGAATTTTGAAGCTAACCAAAACGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAACCCTCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTAAATGTTACAGGCGATAATATTGTGGAACAAGAAGATAAACAATTATCTTCAGTTGGAACTGGTGATTTGAAATCCATCATAGTTGGATTACGTATGTTTGATCCCAATGAAATCAATGATGGAAAAGACAAGGACATGGATTTAACAGAAATTAATGCAATGGCTGACAAAGTGATTGCTATTCGTGATGAACAAATATTTGATAAGGATGACAGGAAATTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATTTGATGTTAAGGAAAGAGGTTCTGCTTCTTTCTCTTGTGATCTTGATCTTGATGAGGCATCATATCTTGCTTGGGTTAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGCGACTCAGTTATTGACTTGAAAAGCAGAAGGAACTTGGATGAGGAAAAGAGTCAAAAACTTGAGACTGCAAGGAAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCTGCTGGATACCAGTCGTTGAATGTTGAAGACCCTATTAGCCCCCCAGATGGGGATACCATATTAGATGCTGGTTCTGTTCATTTTGTCTATGGAGATTGTACAGCCCCTACAAACGTTCCTTCAACTGAACCTGTTTTAATATTCAGCTGTGTTGACACCTCCGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTATCTAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTATGAACATGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGACGGTAATGATCAAAATTTGGACGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCCTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAGGCAGCGTTCTCAGCTGATCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGCTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACGTAAATATATATGTGTATTATTACCGAAGATAA 2712 0.41 MNLKYEQRLQVAAKIILDDDESSGDAAPSEEELGIKATLKPHQVDGISWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVRQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVFKYVGDKEYRRSLRRKTHEHVTKQPTHNVMLPFDVLLTSYDIALMDKDFLSQIPWQYAVIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLDQFLSTFKDISDLTSGEGCPNFINTTHAISLGNVGLNPPLHSQHNEDFGGGNEGIPNSAIRWLGADRNEVGISNNPSCSGPMSSERGLCLYPNIRSRIGSNIILKLWNFKQLVLVYGTSNHQSLQNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHNGHRVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTGLNFEANQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNIVEQEDKQLSSVGTGDLKSIIVGLRMFDPNEINDGKDKDMDLTEINAMADKVIAIRDEQIFDKDDRKFEVNPRNFLKGFDVKERGSASFSCDLDLDEASYLAWVKKFEEVSKSSCDSVIDLKSRRNLDEEKSQKLETARKKAEEKKLSKWNAAGYQSLNVEDPISPPDGDTILDAGSVHFVYGDCTAPTNVPSTEPVLIFSCVDTSGRWGHGGMFDALSKLSSSISDAYERAYEHGDLHLGDLHLIRLEDDGNDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSADQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNVNIYVYYYRR* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0992 903 SUPERFAMILY Macro domain-like 733 900 IPR043472 -
Mtr7g0992 903 CDD Macro_Poa1p-like_SNF2 732 890 - -
Mtr7g0992 903 Gene3D - 13 260 IPR038718 -
Mtr7g0992 903 Gene3D Leucine Aminopeptidase, subunit E, domain 1 732 903 IPR043472 -
Mtr7g0992 903 SMART helicmild6 422 517 IPR001650 -
Mtr7g0992 903 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 2 242 - -
Mtr7g0992 903 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 343 900 - -
Mtr7g0992 903 PANTHER HELICASE CHR10-RELATED 343 900 - -
Mtr7g0992 903 PANTHER HELICASE CHR10-RELATED 2 242 - -
Mtr7g0992 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 561 IPR027417 -
Mtr7g0992 903 Pfam Helicase conserved C-terminal domain 393 517 IPR001650 -
Mtr7g0992 903 Coils Coil 680 700 - -
Mtr7g0992 903 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 564 IPR001650 -
Mtr7g0992 903 CDD SF2_C_SNF 385 528 - -
Mtr7g0992 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 239 IPR027417 -
Mtr7g0992 903 Gene3D - 334 619 IPR027417 -
Mtr7g0992 903 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Mtr7g0992 903 SMART ultradead3 35 235 IPR014001 -
Mtr7g0992 903 Pfam SNF2-related domain 57 241 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0992 Mtr-Chr7 21181888 21189649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0992 391 547 RAD5 or RAD16-like Gene Family AT5G22750 33.758 8.46e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g0992 SNF2_N 6.7e-40 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0992 K20092 - gmx:100797182 1240.71