Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0977 ATGGCTCTTACACTTGAACATGCATTCTCTCATATACTCATCCTTTTAGGTTTACTCTCAATATTCCTAGTGACCCCTTCCATTTGTTTTAATCCAAGGAAGCTTGTTAATGTTAGCTCATACTCCTCATCTGGTTCAGATTGGTCACCTTCAGTTGCTACTTGGTATGGATCTCCCGATGGTGACGGAAGCGAAGGTGGTGCTTGTGGGTATAGAAATGCAGTTGGAGAACCTCCATTCTCTTCGATGATATCAGCTGGAAGCCCTCTCATCTATAACAAAGGCAAAGGCTGTGGTTCTTGTTATGAGGTGAGGTGCACAGGAAATTCTGTATGTTCAGGCAACCCTGTTAAGGTAGTTATCACTGATGAGTGTGCTGGGTGTGGGTCAGATGCTGAATATCATTTTGATTTGAGTGGTAGTGCTTTTGGTTCCATGGCAGTTTCTGGTGAAGATGAAGAGCTACGTAATGCTGGAAAAATAGTCATTGAACACAGAAGAGTTCAATGCAACTATGGTGGTAGTACAATAGCTTTCCACGTGGACTCTGGATCCAACCAAGAATATTTTGCTGCCTTGATTGAATATGAGGAAGGAGATGGTGATCTTAACAAAGTTGAACTCAAGGAAGCACTTGACTCATCCTCATGGGATACTATGCAACAATCATGGGGTGCTGTTTGGAAATTTGATAAAGGAGCACCACTTAAAGCACCAATTTCTATAAGGCTTACCACACTTAAATCTGGCAAAACTATTGTGGCACATAATGTGATTCCTGCAGGTTGGAAGCCTGGTCAGACTTATAGGTCAATTGTGAATTTTTAA 828 0.4179 MALTLEHAFSHILILLGLLSIFLVTPSICFNPRKLVNVSSYSSSGSDWSPSVATWYGSPDGDGSEGGACGYRNAVGEPPFSSMISAGSPLIYNKGKGCGSCYEVRCTGNSVCSGNPVKVVITDECAGCGSDAEYHFDLSGSAFGSMAVSGEDEELRNAGKIVIEHRRVQCNYGGSTIAFHVDSGSNQEYFAALIEYEEGDGDLNKVELKEALDSSSWDTMQQSWGAVWKFDKGAPLKAPISIRLTTLKSGKTIVAHNVIPAGWKPGQTYRSIVNF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0977 275 Pfam Expansin C-terminal domain 177 260 IPR007117 -
Mtr7g0977 275 PANTHER EXPANSIN-B3 15 275 - -
Mtr7g0977 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 271 IPR007117 -
Mtr7g0977 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Mtr7g0977 275 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Mtr7g0977 275 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Mtr7g0977 275 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Mtr7g0977 275 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Mtr7g0977 275 PRINTS Major pollen allergen Lol pI signature 226 243 IPR005795 GO:0005576|GO:0019953
Mtr7g0977 275 SUPERFAMILY Barwin-like endoglucanases 37 174 IPR036908 -
Mtr7g0977 275 Gene3D - 172 275 IPR036749 -
Mtr7g0977 275 Pfam Lytic transglycolase 85 161 IPR009009 -
Mtr7g0977 275 SUPERFAMILY PHL pollen allergen 176 271 IPR036749 -
Mtr7g0977 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Mtr7g0977 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Mtr7g0977 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Mtr7g0977 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Mtr7g0977 275 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Mtr7g0977 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Mtr7g0977 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Mtr7g0977 275 PANTHER EXPANSIN-B2-RELATED 15 275 - -
Mtr7g0977 275 Gene3D - 33 171 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0977 Mtr-Chr7 20866327 20869378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0977 29 275 Expansin Gene Family AT1G65680 58.704 4.27e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0977 - - gmx:548090 468.774