Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0885 ATGGATAATACCAGTGGCGTGAAAAAAGGTACCTGGACGAATGAAGAAGATAACTTACTCAAGGCATGCATTAACAAGTATGGTCAAGGAAAATGGCATCTAGTTCCTCGAAGAGCAGGATTAAATAGGTGTCGAAAAAGTTGTAGATTAAGGTGGTTTAACTATTTAAACCCAACCATCAACAAAGAAAGATTTTCTGAGGATGAAGTTGATATGATCCTAAGGTTACAAAAACTCCTAAAAAACAGATGGTCATTGATTGCGGGAAGGCTTCCGGCTAGAACAGCTAATGATGTCAAAAACTATTGGCACACACATTTGAGGAAGAAGGTTGTTTTAGAAAGAGAAGAAATAAAAGAAGAGAAAATACCAAAGGAAAATGTGAAAGGTCATGATGTTATTAAACCTCAACCTCAAACTTTTTCACCTGATTCTCCTTGGTTTAATAGGAAACATTGTAGTTTTGTGACACAGTCTGTAATGGATTCAAATAAAGATGGTAATATTACCAAAGATGTTCACGACTCAGAGCCTATCCATCCAAATAAAAGTGGTAGAGATTGTGCTTCTACTTCACAACCTAGTAATGTCCCCTTACCGTGTGCAATGTGGTCGGACAATTTATGGAACCTGGGGGAGCAAGTAGGCAATGACAGAATTTGCTCATACTCTTCATTACAAGAAGATATCAACTTCAATACGGAGTTTCCAAATGTTGGTAACTATTTCTCGGATTCCAATCTTCGTGATTATGATTCTTCTTGGGATCATTAG 774 0.3721 MDNTSGVKKGTWTNEEDNLLKACINKYGQGKWHLVPRRAGLNRCRKSCRLRWFNYLNPTINKERFSEDEVDMILRLQKLLKNRWSLIAGRLPARTANDVKNYWHTHLRKKVVLEREEIKEEKIPKENVKGHDVIKPQPQTFSPDSPWFNRKHCSFVTQSVMDSNKDGNITKDVHDSEPIHPNKSGRDCASTSQPSNVPLPCAMWSDNLWNLGEQVGNDRICSYSSLQEDINFNTEFPNVGNYFSDSNLRDYDSSWDH* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0885 257 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Mtr7g0885 257 Gene3D - 2 62 - -
Mtr7g0885 257 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Mtr7g0885 257 CDD SANT 64 107 IPR001005 -
Mtr7g0885 257 SMART sant 8 58 IPR001005 -
Mtr7g0885 257 SMART sant 61 109 IPR001005 -
Mtr7g0885 257 MobiDBLite consensus disorder prediction 171 192 - -
Mtr7g0885 257 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 158 - -
Mtr7g0885 257 Gene3D - 63 133 - -
Mtr7g0885 257 CDD SANT 11 56 IPR001005 -
Mtr7g0885 257 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 158 - -
Mtr7g0885 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Mtr7g0885 257 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Mtr7g0885 257 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Mtr7g0885 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Mtr7g0885 257 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0885 Mtr-Chr7 15589677 15615642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0885 6 142 MYB Transcription Factor Family AT1G66370 60.690 1.94e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr7g0885 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0885 - K09422 mtr:MTR_0023s0260 340.502