Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0879 ATGAGGGCAACACATCATACAATGTCTATGGACAATAAAGGAAAGCGTGTACGAGGAAACTTAAATATGGATATGCCCAGAGGCGTGAGAAAAGGTGCCTGGACATACGAGGAAGATAAGCTACTCAAGGCTTGCATTGACAAGTATGGGGAAGGAAAATGGCATTTAGTTCCTCAAAGAGCAGAATTGAATAGGTGCCGCAAAAGCTGTAGATTGAGGTGGTTAAATTATTTAAGCCCCAACATCAAAAGGGAAAGCTTTGCTGAGGATGAAGTCGATATGATCCTAAGGTTACACAAACTTCTAGGGAATAGATGGTCATTGATTGCTGGAAGGCTTCCGGGAAGAACAGCTAATGATGTAAAGAACTATTGGCACACACACTTGCACAAGAAGGTGGTTTCAAGAACACAAGAAGAAAAGAAAGAAAAAACTAAGGAAACCATGAAATTTCATGAAATTATTAGACCTCAACCTCGAACTTTCTCAACTCATTCACCTTCGTTGAATGGGAAACATAATATTAACGCGACACCAATTGTGGCAATTTCAACTCAACACTGTGAAGTCTCGCCAAATCGTGATAATAAAGAGATTACGGTTCCAAACCAAATTGGTAGAGATATTGTTGGTGTTTCAGAACCAAGTCTTGGTAATGCTCCAATACCGTGTGCAATGTGGTGGGACGGTTTATTGAACTTGCAATGTGGTGAGAAAATTGGTTCAGGCTCTTCATTACAAGAGGAGAACTTTATTGAGTTTCCAAATGTGGATGACTCCTTTTGGGATTTCAACCTTTGTGATTACGATTCTCTTTTAGATCATTAG 828 0.3973 MRATHHTMSMDNKGKRVRGNLNMDMPRGVRKGAWTYEEDKLLKACIDKYGEGKWHLVPQRAELNRCRKSCRLRWLNYLSPNIKRESFAEDEVDMILRLHKLLGNRWSLIAGRLPGRTANDVKNYWHTHLHKKVVSRTQEEKKEKTKETMKFHEIIRPQPRTFSTHSPSLNGKHNINATPIVAISTQHCEVSPNRDNKEITVPNQIGRDIVGVSEPSLGNAPIPCAMWWDGLLNLQCGEKIGSGSSLQEENFIEFPNVDDSFWDFNLCDYDSLLDH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0879 275 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Mtr7g0879 275 MobiDBLite consensus disorder prediction 1 20 - -
Mtr7g0879 275 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 28 186 - -
Mtr7g0879 275 SMART sant 83 131 IPR001005 -
Mtr7g0879 275 SMART sant 30 80 IPR001005 -
Mtr7g0879 275 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Mtr7g0879 275 Gene3D - 31 83 - -
Mtr7g0879 275 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Mtr7g0879 275 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Mtr7g0879 275 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Mtr7g0879 275 CDD SANT 89 129 IPR001005 -
Mtr7g0879 275 MobiDBLite consensus disorder prediction 1 22 - -
Mtr7g0879 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 78 IPR017930 -
Mtr7g0879 275 CDD SANT 33 78 IPR001005 -
Mtr7g0879 275 Gene3D - 85 154 - -
Mtr7g0879 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Mtr7g0879 275 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 28 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0879 Mtr-Chr7 15035653 15036798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0879 26 193 MYB Transcription Factor Family AT1G66370 57.143 2.25e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr7g0879 Myb_DNA-binding 8.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0879 - K09422 mtr:MTR_7g017260 328.946