Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr7g0841 | ATGGTGGAAAGTGATGAACAAAAACGAAGCCCCGTGATCCGAAAGAAAACAGCGACGAATAGCCAAAACATGGCTTCACTTATTAGTCCGAGATTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCGCTGTTACTTGCAACCCTAATTGTTGAAGATACCCCTGATCGAGATCGAAATTCTAAACAGAAGAGACGTTTTGTTTTGAATTCGAAATCTCCGCTCTCCAATTCATCAAGGAAACGCAGAGCTAGGAATCCACCCCAACCAATTGTTCTGGATCTTGATGAAGGAGAAACCCCCAAGAAAGATAGTGGGAAAAAGAAGAAAGAAAAGAAAAATTGTGTTAATGAAGGAAGTAAAGTAGGAGAAAAGGAATTGACTCAGAAGGGATCTGATGTCAATTCTACTGATTCTTCTTCTGCTGCTCTTCCTTGTATGGATAAGCTAAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGAGATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCTAAATGCAGACAATTGATAAGCAATGGTCGATCGTGCACTGTGAACACGGTTCTGTGGAACACAATTCAGCTCCTATTTCCTCAAGAAATTGAAGCTAGGAAAGTTGCTGCTAGCACCTTAAATATTAGAGCAGCAGCAGCTCAGAATCCAATTCCAGAAACAGCATTTTACAATAACCGAAGGAATAGAAGCATTCAGCCGTATCCATCAAGTAGGGGTATGAATTCTAGGAGAAACGAGCAAATAATACTGGATGATGACGAGGATGCTGAATTGGCTAGAAGGTTACAGAGAGAACTTGATGGACAAAATAACAATCATAGAACATCGACAACAACGAGGATTCATGGTGGTAATTCAAGGAATCAAACCTCCTCATCATCAATAAGTGTAAGAGGGAGGACAAGAAGAGGGGTTTCAGGCCAAGATGAAGATGCTGCATTTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCAAGCTTTTACGAATAGAAGCCAGGAACAGTCATCTTCCTCCAATTTATTAGCTAGAGCAAATTTGAGGGCTATGGCAACTAGAGCGATGGATCACCGTATTAGAGATCGAAGGATGTAA | 1176 | 0.4141 | MVESDEQKRSPVIRKKTATNSQNMASLISPRFKSAAAMAGWDEEALLLATLIVEDTPDRDRNSKQKRRFVLNSKSPLSNSSRKRRARNPPQPIVLDLDEGETPKKDSGKKKKEKKNCVNEGSKVGEKELTQKGSDVNSTDSSSAALPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAASTLNIRAAAAQNPIPETAFYNNRRNRSIQPYPSSRGMNSRRNEQIILDDDEDAELARRLQRELDGQNNNHRTSTTTRIHGGNSRNQTSSSSISVRGRTRRGVSGQDEDAAFALRLQREEFMQAFTNRSQEQSSSSNLLARANLRAMATRAMDHRIRDRRM* | 392 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr7g0841 | 391 | ProSitePatterns | Zinc finger RING-type signature. | 173 | 182 | IPR017907 | - | |
| Mtr7g0841 | 391 | Pfam | Zinc finger, C3HC4 type (RING finger) | 158 | 196 | IPR018957 | GO:0046872 | |
| Mtr7g0841 | 391 | PANTHER | UNCHARACTERIZED | 13 | 257 | - | - | |
| Mtr7g0841 | 391 | PANTHER | UNCHARACTERIZED | 297 | 389 | - | - | |
| Mtr7g0841 | 391 | PANTHER | - | 13 | 257 | - | - | |
| Mtr7g0841 | 391 | PANTHER | - | 297 | 389 | - | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 98 | 130 | - | - | |
| Mtr7g0841 | 391 | ProSiteProfiles | Zinc finger RING-type profile. | 158 | 197 | IPR001841 | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 292 | 336 | - | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 69 | 86 | - | - | |
| Mtr7g0841 | 391 | SMART | ring_2 | 158 | 196 | IPR001841 | - | |
| Mtr7g0841 | 391 | SUPERFAMILY | RING/U-box | 150 | 221 | - | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 251 | 272 | - | - | |
| Mtr7g0841 | 391 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 227 | IPR013083 | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 297 | 329 | - | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 56 | 142 | - | - | |
| Mtr7g0841 | 391 | MobiDBLite | consensus disorder prediction | 251 | 274 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr7g0841 | 94 | 201 | C3H Transcription Factor Family | AT2G42030 | 30.000 | 3.35e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr7g0841 | - | - | gmx:102666585 | 398.667 |