Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0704 ATGGCTGGTGTTTCTAGCATAACTCATACCAACAATGTTCCCTTGATCAGGTTTCTTTCAAATGGTGGTTCATCAAAGCGGAGAAAGAGTGATGAAGATGATATGAGTTTTGACTCTCTTTCTGGTTCTAAGAAACGAAAGGTAAGAGAAGAACCTTTTCTTATTCCAGAGAATGCTAAGATCATTTCCATTGATGATGATGATAATGAAGGGTCGGAGCAGTGTGATGAGAAGATGTTTGAGGGTGTTTTTGATGTTAAAAAGGAAGTAAAAAGTGGAGGAAGTGGCAAGTTTTATGCTAAAGATGGAACAGTTGAAAACCCGATTACAATAATTTCAGATGAATATGGTGAAAGTGATGAAAAACACTCCAAGAAACGAAAGTTAAAAGAAGAACCTTTTGTTGTTCATGATAATTCTGAGGTTATTTTCTTTGATATTGGTGATGAGAAGATGTTTGTGGATGGTTATGATGTTACCGAGAATGTGAAAATTGATGAAAGTGGCAAGTTTGATGCGAAAGATGGAAAGTTTGTTGACGAAAAGTGTGGTTGGACACTTGAAAACCCGATTACAATACAATCAGATGACGAACACTCTGTTAGTTCTGATTCTAATGATGATGAAGAAGAAGAAAATTATGATAATGTTAAACAGGGAGAAAAAAGTGGAGCAAGCGATGAGTCTGCTGATAAAGATATTTTTTTTGTAGATTTGGATGATTCTGATGAGAGTGATGAAGAACACTCTGTTGGTTCTGCTTCTGATTCAGATTCAGATTCCAATTCTGATTCTGATGATGATGATGATAATGTTCAAGAGGGTGCAAAAAGTGGAGGAAGTGGTGAGTTTGCTGATAAAGATAATTTTTTTGTTGATTTGGATGATTCTGATGAGAGTGATGAAGAACACTGTTTTGATTCTGATGAAAGTGAAGAAAATGAGACTAGCGATGAGGATTTTAGAGTTGATGAGCTGAATGAGATTTCTGACAATGATGACGATAGTTCTTCTGATAATGATGGTAAGGAGAAAGAGAAGAAAAAGGGTGGGCGAAAATACGATAATGTCGCAGAGGAATTGTTGAGAGAGGCAATTGATAGACACAATGGAATTTCTGAGATGAATAATGAGGAGGTGAAGGATAAAAGTCCTTCTATAAAGAATGATGAAGTGGAGCATTCAGATTATGGTAGTGTAGCAACTTCTACTACCTTTGAGAAGAAGGGTTCTTCTTCAAACAAGAATGATACATCAAAGAAACAAAAAGCAAAAAGTGTGGAAAATGTTTCTGACGATGATGTAAATGTTGCCAAAGCCAAAGAAAGGGCTAAACCTAATGAAACTGTGAATCTTCGTGATGATGTTAATGTTGCTAAAGCCAAATGCAAATCCCATGTCAAAGCCAAAGACAATGCCAAACCTTATGAAAGCGTGGATGTTTCTGATTCTGACGAAGGAAAAGAGCATGTCAAAGGTTTAGATGCTGGGGGCGTTTCTTTGGTTCAAACAAAGCAAGAAATGATAAAGGAATCACGTAAACAGAAAATGGTGGAGAACAAAGGAAGGGATTATAAAGGTATAGCTAACATCCATATCGAGAAGAAGAATGAATCTATTGATAATAATGGTTTGATACAAAGCGTCAAAAGCACACATTTTATGTGGAATGAGTTGCTCCTTGCTAAATGCTATTGGGACAGTATGAATACCATGAAGAATGATTCAACTTTGTTCGAGTTTGAGGAGGATGGCGTTGATCGACAAGATACACAGCCACAACCGGTTTCTGTGGAGACACCCCCATCGATATGGAGCCTTAAGAAGGTGGAAAAAGTGCAAAAGACCATGGAGGAGGAGGAGAACGAAGTGTTATGGGATGAATTAGATACAGTTCTTAGAGAATCTGACGCTGTATCCATGATTGGAAATTTAGGGACAAATGAAGCTACAAATATAAAAAGCGGAAGTCCATCATCTCGATGTGAACACGACACTTTTCTCGACGAAGAGATTGGTGTATATTGCAAATTGTGTGGTGTGGTTATTACTGAGATCAAATATATCTCACCACTAGTGGTTGAAAGATTTCCATGTGAAGGTTCAGGAAGAAAGGCATCATTTGATGGTGTAAATGTTTCACTGTTTGATGGATCTCAATTCAATGTTTCTGATAAAGATTCAGAAACTAATTTCTCTCGCAATGAGGGAACAGTTTGGGACCTAATTCCAGATTTGATACAAACTTTATATCCTCATCAACAAGAAGGCTTTGAATTCATTTGGAAAAACTTGGCAGGAAGCGTAAAGCTTCAAAAGTTAAAGAATGTCGATCCTTGCAGTGAAGGTGGCTGCATTATTTCTCATGCTCCTGGTACCGGAAAGACAAGGCTGACCATAGTGTTTCTCAAGGCATATTTGAAAGCCTTTCCCAAATGCTTGCCGATTATTGTCGCTCCTGCTAGTATACTACTAACTTGGGAGGATGAATTCAAGAAATGGGACATTGGAGTTCCATTTCACAATTTAAGCAATCCCGAGTTATCTGGTAAAGAGCATGCTGATGCGGTTGAAACGTTTGATAGGTCCAATACACAACATAATATTCATGAAACGCGGATGGCAAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTACAATTTGTTTGGAAAAAAATGCCAAGATAAGAAAAAGCTTGAAAATGTGAAGGAGAGAAAAGGAAACTGTGATATGCGAAAGATTCTGCTTAAATCTCCCGGTTTGTTAGTTCTAGATGAAGGACACACACCAAGAAATCAAAGAAGTCATATTTGGAAGGTGTTGTCCAAGATTCAAGCGCAGAAGCGAATCATCCTTTCCGGAACTCCATTCCAGAACAATTTCTGGGAGCTTTACAGCACCTTAAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCGCCTGAGCTAAAAAGTTTTTGCCATAAGCAGGGACATAAATCATCTAAAAAGCGGAGTTGTGAACCTGTTTCAGGCAACACAACAAGAGACCCTTCTGATGATAAGATCAAGAAGCTGAAAATGCTAATGGATCCCTTTGTACATGTTCACAAAGGGGCGATCCTTGAAAATAAGCTTCCCGGGTTAAGGGACTGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAACGAAATTCTGAAGAGCATTAAACGTTCTCAGAACACCATATTTAACTTTGAACGTAAGATAGCATTGACATCCGTCCATCCATCGCTTTTCCTTGAATGTTCTCTTTCGGAAGAAGAAGAATCTGCTCTTGACAAGGATCAGCTGGAAAAGCTTAGACTGAACCCACATGAAGGTGTCAAAACAAAATTTTTGTTCGAGTTTGTTCGGCTATGCGATGCTTTTCACGAGAAAGTTCTTGTGTTCAGCCAATTCCATGCGCCTTTACAATTAATTAAAGACCAATTAACCTCTGCTTTTAAATGGTCTGAGGGAAAGGAAGTGTTATTCATGTCTGGCAAAGATCCTCCAAAGGTCAAGCAATCCGTAATCCATAGCTTCAACGATGCAAATTGCCAAGCAAAGGTTCTACTTGCATCTACAAAAGCTTGTTCTGAGGGAATTAGCTTAGTTGGAGCTTCTAGGGTTGTACTTCTGGATGTTGTATGGAATCCTTCTGTCGAAAGACAAGCTATCAGCCGAGCATATAGGATTGGTCAGAAGAGAGTGGTATACACATACCATCTGCTCGCTGAAGGGACTACTGAGGAAGAAAAATATGGTAAACAGGCCGAAAAGGACCGGTTATCTGAGCTTGTTTTTTCGGAGAAAAATGCCACCGATATTGATGAGGAGTCCAAGAGCTGTGCAGGGAACTTTGAAGATAGAGTTCTTGATCAGATGACTCGGCATGAAAATCTCAAAGACATGTTTGTTAAGTGTGTGGTACTGAGGAAGGAGCGAGATGTGGTCTGA 3975 0.3884 MAGVSSITHTNNVPLIRFLSNGGSSKRRKSDEDDMSFDSLSGSKKRKVREEPFLIPENAKIISIDDDDNEGSEQCDEKMFEGVFDVKKEVKSGGSGKFYAKDGTVENPITIISDEYGESDEKHSKKRKLKEEPFVVHDNSEVIFFDIGDEKMFVDGYDVTENVKIDESGKFDAKDGKFVDEKCGWTLENPITIQSDDEHSVSSDSNDDEEEENYDNVKQGEKSGASDESADKDIFFVDLDDSDESDEEHSVGSASDSDSDSNSDSDDDDDNVQEGAKSGGSGEFADKDNFFVDLDDSDESDEEHCFDSDESEENETSDEDFRVDELNEISDNDDDSSSDNDGKEKEKKKGGRKYDNVAEELLREAIDRHNGISEMNNEEVKDKSPSIKNDEVEHSDYGSVATSTTFEKKGSSSNKNDTSKKQKAKSVENVSDDDVNVAKAKERAKPNETVNLRDDVNVAKAKCKSHVKAKDNAKPYESVDVSDSDEGKEHVKGLDAGGVSLVQTKQEMIKESRKQKMVENKGRDYKGIANIHIEKKNESIDNNGLIQSVKSTHFMWNELLLAKCYWDSMNTMKNDSTLFEFEEDGVDRQDTQPQPVSVETPPSIWSLKKVEKVQKTMEEEENEVLWDELDTVLRESDAVSMIGNLGTNEATNIKSGSPSSRCEHDTFLDEEIGVYCKLCGVVITEIKYISPLVVERFPCEGSGRKASFDGVNVSLFDGSQFNVSDKDSETNFSRNEGTVWDLIPDLIQTLYPHQQEGFEFIWKNLAGSVKLQKLKNVDPCSEGGCIISHAPGTGKTRLTIVFLKAYLKAFPKCLPIIVAPASILLTWEDEFKKWDIGVPFHNLSNPELSGKEHADAVETFDRSNTQHNIHETRMAKLISWFKETSILGISYNLFGKKCQDKKKLENVKERKGNCDMRKILLKSPGLLVLDEGHTPRNQRSHIWKVLSKIQAQKRIILSGTPFQNNFWELYSTLSLVKPSFPNTIPPELKSFCHKQGHKSSKKRSCEPVSGNTTRDPSDDKIKKLKMLMDPFVHVHKGAILENKLPGLRDCLVTLKADSLQNEILKSIKRSQNTIFNFERKIALTSVHPSLFLECSLSEEEESALDKDQLEKLRLNPHEGVKTKFLFEFVRLCDAFHEKVLVFSQFHAPLQLIKDQLTSAFKWSEGKEVLFMSGKDPPKVKQSVIHSFNDANCQAKVLLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLAEGTTEEEKYGKQAEKDRLSELVFSEKNATDIDEESKSCAGNFEDRVLDQMTRHENLKDMFVKCVVLRKERDVV* 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 17 51 - -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 188 452 - -
Mtr7g0704 1324 Pfam Helicase conserved C-terminal domain 1134 1239 IPR001650 -
Mtr7g0704 1324 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 255 1323 IPR044567 GO:0080188
Mtr7g0704 1324 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 349 IPR044567 GO:0080188
Mtr7g0704 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 740 985 IPR027417 -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 336 395 - -
Mtr7g0704 1324 Gene3D - 1046 1321 IPR027417 -
Mtr7g0704 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 922 1280 IPR027417 -
Mtr7g0704 1324 CDD SF2_C_SNF 1121 1250 - -
Mtr7g0704 1324 Pfam SNF2-related domain 769 1068 IPR000330 GO:0005524|GO:0140658
Mtr7g0704 1324 SMART ultradead3 746 991 IPR014001 -
Mtr7g0704 1324 Gene3D - 719 1031 IPR038718 -
Mtr7g0704 1324 SMART helicmild6 1150 1239 IPR001650 -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 396 412 - -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 413 452 - -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 215 236 - -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 24 51 - -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 292 335 - -
Mtr7g0704 1324 MobiDBLite consensus disorder prediction 992 1018 - -
Mtr7g0704 1324 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1127 1280 IPR001650 -
Mtr7g0704 1324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 776 979 IPR014001 -
Mtr7g0704 1324 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 349 - -
Mtr7g0704 1324 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 255 1323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0704 Mtr-Chr7 10903020 10907496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0704 1137 1269 RAD5 or RAD16-like Gene Family AT5G43530 40.602 3.77e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g0704 SNF2_N 5.1e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0704 K10875 - gmx:100806733 845.114