Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0610 ATGGAAATGAGAGAAAAAAGCTCTGATACCATGTTATGGGAAGCAAATAATGAAAAAAATCTCATTTCTCATAGATCATTTGAAGCAATAAGGAATGACTCATGGCAACCTGTGGAGCTTATAAAAATTGATTTTGGAAAAACAACCTTACATTTCATGGATACTCAACAAATGCAAACCCCTTTGTCATCTGATATTCGCATAAGATCAAGAAAAGCTACTTCATTTGATTGCTCTAGTTTTTTACGACGTGGAATGGACATATCTATGCTCCAAATTTCAGATCAATTTAGACCTATTCCAACGTCAATCGATGCAAGAATAAATTCAATCCAGAGACAACCTCATGAGTCTGATCAATGCTCGTGTCAGTTTTATGTAAATTTCTACGAGGATCAAGGTTCACTTGGTAGAAATATAAAAACACTCAATAAGGAGGTTTATGCAACTGGAATAGATCGAATTTTCATCCTCCAAAGGCTTCAACATAATAGTTGTGAAGGCTTAATAAAAAATAGTGATAGTTCTGAAGTGGTTAAGCCTTATAGGTGGGATTCATCTGAAGATTGCTCCTCATTATCAGAGTCTAGACTAATCTTGGGGAGATTTTTATCTGATCTTTCGTGGTTCGTTACAACATCCTTTTTAAAGAAGGTTTCATTCAGTATCAGATCTGTTCAAAACAAGATTTTTTATCATGTTATGGGAAACGATGCTGATATTATTAATCCATCTCTTCTAAATGTTGTGAACTTCAAATCGGAAAAGGGATCAATAGTACCTGTGGTTTCTCTATTCGATATGTTTTGTGATTATGACGGAGAAGAAGATGAAGCGCTGCCAATGCTATCAAATCAAATTGAAGGCCTACGACGTTCAAAACGTAGGAATGTCCAACCCAAACGTTACATAGGTTCTTCTGTTGAGAAGTTGGAAGTTGGTACTTTTCGAATGAGGCCATACAAGATAGGATGTTATTTGATAGAGGATGAAAATTCTTCAGATTTAGAAGTTGATGATAATGTTACTTTGGGACATTATTATAGTTTCTGCAAAGAGAAGCCTACGAAGAGGCGACTTCATGGTTCAGACGATATGGATTTTGAAACCAAATGGGAAGGAATTCGTTTCAAAAAAGGAGCTCAAACAAAAAGAAACCATTCAATTTGTTTGACAAACAGAAGTCATGTTCAAGAAGGTGGCAGAACGTTAAATGTTGATGCAAAGAAGGAAATAATTGACACTTACATGAAGAATTTGGATAGTCTTCGGGCTGAAGAAGAGCCAACTATTGACGAAGAAACAAACAAGTTGGAGGAAGAAAAAGTGTCGAAAAGCGATGATGGGGAAGAAAATCCTGATGACTTGTCTGCCATTTGGGAAGAAATGGATACTGCTATGGCAGCAAGTTGTCTTCTTGATGGAACTGAGGGTTCAAATGCAGAGGTTTTAGCAGACACCGAGGAAATTTGTGAACATGACTATACGTTCAATGAAGAAATCGGAATATTCTGTCTTAGCTGCGGCTCTGTGAAAACCGAGATACGAGACATTTCTGAACCAGTTGTGGAAAGACAAAAATGGCGCAAAGAGGAGAAACAATACAGTGAAGAAGATAATGATGAACAAAAATCAGAGGCAAAAGTTGATGAAGATGATAATAAAGATATGTTCTCAACTAATGCTACTGATCCTGATGAACCAATATCTGCAGAAAAAGACACTGTTTGGGAATCGATTCCAGAACTCAAAGAAAAGATGCATGCGCACCAGAAAAAGGCTTTTAAATTTCTTTGGCAAAACATTGCTGGCTCCATGGAACCATCCCTCATGCAAGAAAGATCCGAAACAAATGGTGGATGTGTCATATCACATGCTCCTGGAGCTGGAAAAACCTTTCTCGTCATTTCTTTTCTTGTAAGTTACTTGAAGCTCTTTCCAGGGAAAAGACCATTAGTCCTTGCACCAAAATCCACACTCTACACATGGTGCAAAGAGTTCAAAAAATGGAAGGTTCCTGTGCCCGTGTATCTTATCCAAGGCCGTCAAACCCAGAGAGATTCAACGGCTCCAAAACCTACGGTTCTTCCCGGAGTTCCAAGACCTTCTGGTGATGTAAAACATGTTTTGGATTGTCTTGGAAAAATAAAAAAGTGGCATTCACACCCAAGTGTTCTTGTCATGGGCTACACTTCATTTTTAGCCTTAATGAGACAAGATACAAAATTTGCACACAGAAAGTACATGGCGAAAACTTTGCGAGAAAGCCCTGGAATCTTGATACTTGATGAAGGTCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAATGCTTAATGGAACTTCCAACAGAATTGAGGATATTACTTTCTGGCACTTTGTTTCAGAACAATTTCGGTGAATATTTCAATACACTGTGTTTAGCAAGACCAAAATTTGTTCACGAAGTGCTACGAGAGTTAGATTCTAAATACTTAAGGAGAGGTAACAGAGAGAAGAAAGCGCAGCATTTGCTTGAGGCGCGGGCGAGGAAATTCTTCTTGGACAACATTGCTAGGAAAATTAACTCAGATAACGATGAAGAAAAAATGCAGGGTCTACATGTGCTGCGAAAGATCACAAGCAGTTTCATCGACGTTTATGAAAGTGGAAATTCCTCTGATACACTTCCTGGTTTACAAATATATACACTGCTCATGAATACATACGATGAACAGCTTGAGATTTTACAGAAACTGCAGAAGAAAATGGCTGAGTGTACTGGTTACCCTCTTGAGGTAGAGCTTTTGATAACACTTGGATCGATACATCCATGGTTGATCAAAACAGCAACAGCATGTGCAGAGAAGTTTTTTGCTGAAGATGAATTGAAGAGGCTAGACAGAATCAAATTTGATTTAAGAAAAGGTTCCAAAATAAGATTTGTTCTGAGCCTAATCTCACGTGTAGTGAAAAATGAAAAGGTTCTTATCTTTTGTCACTACCTTGCACCTGTGAGATTTTTCATAGAGTTGTTTGAGAAATACTTTCAATGGCAAAATGGAAAAGAGGTTCTGATACTTACTGGTGATCTAGATTTGTTTGAAAGAGGAAAAGTGATTGATAAGTTTGAAGATCCTCGCAGCGGTTCGAAGATACTTCTAGCTTCAATCAATGCTTGTGCTGAAGGTATTAGCTTAACAGCAGCTTCTAGAGTGATTTTTTTGGATTCTGAATGGAATCCTTCAAAAACAAAGCAAGCTATTGCACGCGCTTTTCGTCCTGGTCAGCAGAAAATGGTTTACGTGTATCAGTTATTAACGACTGGGTCAATGGAGGAAGATAAGTTTAGAAAAACTACCTGGAAAGAGTGGGTTTCTAGCATGATTTTTAGTGAGGAGTTTGTGGAAGATCCATCTAAATGGCAAGCAGAAAAGATTGAAGATGAAATACTTAGGGAGATGGTTGAAGAGGATAAGTCTAAAGCTATTCATATGATTATGAAGAATGAAAAGGATTCTGTAAGGAATATGCCACGTCATACAGAAGGACAGCAAGGCCTTCTAGAAGGATCATATTTGATTATGCAAGAGCCACAATCTGATGGACACTAG 3594 0.3787 MEMREKSSDTMLWEANNEKNLISHRSFEAIRNDSWQPVELIKIDFGKTTLHFMDTQQMQTPLSSDIRIRSRKATSFDCSSFLRRGMDISMLQISDQFRPIPTSIDARINSIQRQPHESDQCSCQFYVNFYEDQGSLGRNIKTLNKEVYATGIDRIFILQRLQHNSCEGLIKNSDSSEVVKPYRWDSSEDCSSLSESRLILGRFLSDLSWFVTTSFLKKVSFSIRSVQNKIFYHVMGNDADIINPSLLNVVNFKSEKGSIVPVVSLFDMFCDYDGEEDEALPMLSNQIEGLRRSKRRNVQPKRYIGSSVEKLEVGTFRMRPYKIGCYLIEDENSSDLEVDDNVTLGHYYSFCKEKPTKRRLHGSDDMDFETKWEGIRFKKGAQTKRNHSICLTNRSHVQEGGRTLNVDAKKEIIDTYMKNLDSLRAEEEPTIDEETNKLEEEKVSKSDDGEENPDDLSAIWEEMDTAMAASCLLDGTEGSNAEVLADTEEICEHDYTFNEEIGIFCLSCGSVKTEIRDISEPVVERQKWRKEEKQYSEEDNDEQKSEAKVDEDDNKDMFSTNATDPDEPISAEKDTVWESIPELKEKMHAHQKKAFKFLWQNIAGSMEPSLMQERSETNGGCVISHAPGAGKTFLVISFLVSYLKLFPGKRPLVLAPKSTLYTWCKEFKKWKVPVPVYLIQGRQTQRDSTAPKPTVLPGVPRPSGDVKHVLDCLGKIKKWHSHPSVLVMGYTSFLALMRQDTKFAHRKYMAKTLRESPGILILDEGHNPRSTKSRLRKCLMELPTELRILLSGTLFQNNFGEYFNTLCLARPKFVHEVLRELDSKYLRRGNREKKAQHLLEARARKFFLDNIARKINSDNDEEKMQGLHVLRKITSSFIDVYESGNSSDTLPGLQIYTLLMNTYDEQLEILQKLQKKMAECTGYPLEVELLITLGSIHPWLIKTATACAEKFFAEDELKRLDRIKFDLRKGSKIRFVLSLISRVVKNEKVLIFCHYLAPVRFFIELFEKYFQWQNGKEVLILTGDLDLFERGKVIDKFEDPRSGSKILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSMEEDKFRKTTWKEWVSSMIFSEEFVEDPSKWQAEKIEDEILREMVEEDKSKAIHMIMKNEKDSVRNMPRHTEGQQGLLEGSYLIMQEPQSDGH* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0610 1197 MobiDBLite consensus disorder prediction 423 452 - -
Mtr7g0610 1197 CDD SF2_C_SNF 971 1100 - -
Mtr7g0610 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1155 IPR027417 -
Mtr7g0610 1197 SMART ultradead3 583 820 IPR014001 -
Mtr7g0610 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 827 IPR027417 -
Mtr7g0610 1197 MobiDBLite consensus disorder prediction 523 569 - -
Mtr7g0610 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 975 1136 IPR001650 -
Mtr7g0610 1197 Pfam SNF2-related domain 592 857 IPR000330 GO:0005524|GO:0140658
Mtr7g0610 1197 Gene3D - 554 854 IPR038718 -
Mtr7g0610 1197 MobiDBLite consensus disorder prediction 423 455 - -
Mtr7g0610 1197 Coils Coil 406 426 - -
Mtr7g0610 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 27 332 IPR044567 GO:0080188
Mtr7g0610 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 337 1166 IPR044567 GO:0080188
Mtr7g0610 1197 MobiDBLite consensus disorder prediction 523 560 - -
Mtr7g0610 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 612 812 IPR014001 -
Mtr7g0610 1197 SMART helicmild6 1004 1089 IPR001650 -
Mtr7g0610 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 337 1166 - -
Mtr7g0610 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 27 332 - -
Mtr7g0610 1197 Gene3D - 893 1178 IPR027417 -
Mtr7g0610 1197 Pfam Helicase conserved C-terminal domain 972 1088 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0610 Mtr-Chr7 9262546 9266919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0610 429 1107 RAD5 or RAD16-like Gene Family AT1G02670 22.758 2.01e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr7g0610 SNF2_N 7.6e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0610 K10875 - egr:104421037 1116.68