Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0549 ATGTCCACCAACTATGAAAGACCAAAAATCAACACATCAAACCACCAACGATTCTACAATTTCTCATCAAAAGGTGCAATGGAGCCTCTGACGATTTCAAACTCTAAATTGCTTGATTGCTGCAATTGTTTTCAACCTCTAAGTATTCCTGTCTTTCAGTGTGATAATGGTCATATCGTTTGCTCTACCTGCTGTCCTAAACTTAGGAACAAGTGTCACAAGTGCTCATTGCACATTAGCTCAAAACGTTGTATAGCCATTGAGAATCTATTGCAATCTATCGAAATGTCATGTCTGAATGCAAAACATGGTTGCAAGGAGAAAATAAGTTACACCGGAAATAGGAAGCATGAAGAAGAATGCATCTATGTACCATGTTACTGTCCCCTTTCAGGTTGTGACTTTGTTGCGTCATCAGAAGTGTTGTCCAACCATTTCAGCCATAAACATGGGGATTCTCAAATCGAATTTTCTTATGGTCACTCCTTCATTGTCTCCTTGATGTCTAATGGTGAAACCATTGTTCTTCAAGAGGAAAATGACGGAAAACTATTTATTCTAAATAACAATACTATGAGTTTGGGAAAAGCAGTCAATATTTGCTGCATTGGTCCTAACTCTTCTGGGTCCGAGTATAGTTATGATATATCGGCTAAGTCTGAGATATGCAAACTGAAATTACAGTCTTTTGCGAAGAACGTCCAACAGTTTACTTTAGCAACTCTTTCATCAGAGTTCCTTGTGATTCCATTTCGTTCTTCTGAACCTCTCAAGCTAGACATTTGCATAACCCCCACGATGCAAATCTACGTGATGACCCAAACTGGAAAGGTGATCCCCATAGGGGTTAAGAGTTCAGACACAATAGGCAATGTGAAGGAGAAGATTTTCGACAAGAATAAAGATTACCAAGTACACGTGCAACGTCTGATCTTTGCCAGTAAGCAATTAGATGACAGCCTGACCATTGCCAATTGCAACATCCAAGAGAGGTCAACCCTCCACCTCGTCAGCCGCCTCATCGGAGACTAG 1032 0.4031 MSTNYERPKINTSNHQRFYNFSSKGAMEPLTISNSKLLDCCNCFQPLSIPVFQCDNGHIVCSTCCPKLRNKCHKCSLHISSKRCIAIENLLQSIEMSCLNAKHGCKEKISYTGNRKHEEECIYVPCYCPLSGCDFVASSEVLSNHFSHKHGDSQIEFSYGHSFIVSLMSNGETIVLQEENDGKLFILNNNTMSLGKAVNICCIGPNSSGSEYSYDISAKSEICKLKLQSFAKNVQQFTLATLSSEFLVIPFRSSEPLKLDICITPTMQIYVMTQTGKVIPIGVKSSDTIGNVKEKIFDKNKDYQVHVQRLIFASKQLDDSLTIANCNIQERSTLHLVSRLIGD* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0549 343 Pfam Ubiquitin family 269 339 IPR000626 GO:0005515
Mtr7g0549 343 Gene3D - 263 343 - -
Mtr7g0549 343 SUPERFAMILY Ubiquitin-like 250 342 IPR029071 -
Mtr7g0549 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 146 IPR013083 -
Mtr7g0549 343 ProSiteProfiles Zinc finger SIAH-type profile. 93 151 IPR013010 GO:0008270
Mtr7g0549 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 269 - -
Mtr7g0549 343 SMART ubq_7 267 339 IPR000626 GO:0005515
Mtr7g0549 343 ProSiteProfiles Ubiquitin domain profile. 267 343 IPR000626 GO:0005515
Mtr7g0549 343 SUPERFAMILY TRAF domain-like 94 264 - -
Mtr7g0549 343 Pfam Seven in absentia protein family 83 250 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr7g0549 343 PRINTS Ubiquitin signature 277 297 IPR019956 -
Mtr7g0549 343 PRINTS Ubiquitin signature 320 341 IPR019956 -
Mtr7g0549 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 22 269 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0549 Mtr-Chr7 8393661 8397539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0549 22 264 C3H Transcription Factor Family AT2G41980 24.809 3.54e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0549 K04506 - gmx:100778869 247.284