Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0544 ATGCCCGCCGGACTCGACATGTCACTCGATCAAATCACCACTCACCGCCGCACCACCTCCAACCGACCAAATCGCCACCTCGGCGTTCGCAGCAACTCAGTCAGAATCACTCCTTACTCCATTTCTCACTCTCAGATGCTTGAAAGAGAAGCGTTGCGAAGAAGCAATGTTGATGATGTTCCTCAAGAAATGGTTCTGGATCAACCTCACCAGAAACCTATCACCAAACTCTATTTGTCTAATTTGGATGATCGGGTTTCCAACGAAGACATTCATCTGTTGTTCTCGGAAGAGGGTGAGTTGGAAAGTTACTCCATTCATTATGATCAATTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGAGGCTTTAGCCGCTCTCAAGAGGTACAACAATATGAAGCTTGATGGAAAGACATTGCAAATTGAGCTTGTTGGAACAAGTTTGGTTACTCCTGCTGCTGCGCCTCTTGGACAAAGTAGCTTACTAGGAAAACCAAATGATGTCTTTGCAAGGTGCAAAATTCCAAGTCCTGGTCTTATGAGCTCTGGAACAAATTTGGTTACTCCTGCTGATATGCCTCTTGGTCGAAGTAGCTTACTGGGAAAGCCAAATGATGTCTTCGCAAGGTGTCAAATTCCGTTTCCGGGTTTCATTAGCTATGGAACAACTGTTGATATGCCTCTTGGTCGAAGTAGCTTACATGGAAGACCAAATGATGTCTTTGCAAGGGAAGAAAGAAAATTTGGAGGTAGCAAGTACAATAATAGCTCTACAGCAACACATGGCTATCTTCCAAGAAAGGACCATACACGAAAAGCAAAACGCCAGATTCCAATGGTGTCTGCGAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTCAGAGGCTCTGAAGGAAAACAAAGGAAAAGGAAAGGGAAATCATGATTGA 948 0.442 MPAGLDMSLDQITTHRRTTSNRPNRHLGVRSNSVRITPYSISHSQMLEREALRRSNVDDVPQEMVLDQPHQKPITKLYLSNLDDRVSNEDIHLLFSEEGELESYSIHYDQFGRSKGTAEVVFTRQSEALAALKRYNNMKLDGKTLQIELVGTSLVTPAAAPLGQSSLLGKPNDVFARCKIPSPGLMSSGTNLVTPADMPLGRSSLLGKPNDVFARCQIPFPGFISYGTTVDMPLGRSSLHGRPNDVFAREERKFGGSKYNNSSTATHGYLPRKDHTRKAKRQIPMVSAKDLDEDLERYRSEALKENKGKGKGNHD* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0544 315 MobiDBLite consensus disorder prediction 280 315 - -
Mtr7g0544 315 Gene3D - 33 149 IPR012677 -
Mtr7g0544 315 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 301 - -
Mtr7g0544 315 MobiDBLite consensus disorder prediction 255 315 - -
Mtr7g0544 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 77 145 IPR000504 GO:0003723
Mtr7g0544 315 MobiDBLite consensus disorder prediction 1 26 - -
Mtr7g0544 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 152 IPR000504 GO:0003723
Mtr7g0544 315 MobiDBLite consensus disorder prediction 11 26 - -
Mtr7g0544 315 SMART rrm1_1 76 148 IPR000504 GO:0003723
Mtr7g0544 315 PANTHER THO COMPLEX SUBUNIT 4A 6 301 - -
Mtr7g0544 315 SUPERFAMILY RNA-binding domain, RBD 64 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0544 Mtr-Chr7 8318762 8322043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0544 77 150 Eukaryotic Initiation Factors Gene Family AT2G23350 39.189 1.49e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0544 K12881 - gmx:100785926 184.111