Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0527 ATGAAGAGGGCAAGAGAGGTTGATAGCATAACCATGGCAAATTGTTTGATGTTACTTTCTCGTGGAAGTGATCAATTTGAAGCCACATATTCATCTACCACTTCAAACAATCGTGTGTTTGAATGTAAAACATGTAATAGACAATTTCCTTCATTTCAAGCCCTAGGTGGTCATAGGGCAAGTCACAAGAAACCAAGGTTGATGGGAGAAAATATTGATGGTCAATTGCTACATACACCCCCAAAGCCTAAAACACATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGCCACATGAGGAGACATAGAGCTGCAAATATGAACGGAAATAAAAACATGCACAATTCTAATAATACTATGAGTTGTAGCAGTGGTGGTGGTGGTGATAGTAGTATCGATTCTTCACAAAAGATGAAAGCTAGAAACAAGAGAGTTTTGGTTTTGGATTTGGATTTGAATTTGACTCCCTTTGAGAATGATATGGAGTTTCTGAAGATTGGAAAGGCAACTGCTAATTTGATTGATTATTTTCATTGA 555 0.3748 MKRAREVDSITMANCLMLLSRGSDQFEATYSSTTSNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMGENIDGQLLHTPPKPKTHECSICGLEFAIGQALGGHMRRHRAANMNGNKNMHNSNNTMSCSSGGGGDSSIDSSQKMKARNKRVLVLDLDLNLTPFENDMEFLKIGKATANLIDYFH* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0527 184 SMART c2h2final6 40 62 IPR013087 -
Mtr7g0527 184 SMART c2h2final6 86 108 IPR013087 -
Mtr7g0527 184 MobiDBLite consensus disorder prediction 114 141 - -
Mtr7g0527 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Mtr7g0527 184 MobiDBLite consensus disorder prediction 114 142 - -
Mtr7g0527 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Mtr7g0527 184 Pfam C2H2-type zinc finger 39 65 - -
Mtr7g0527 184 Pfam C2H2-type zinc finger 86 110 - -
Mtr7g0527 184 PANTHER ZINC FINGER PROTEIN ZAT5 11 171 - -
Mtr7g0527 184 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Mtr7g0527 184 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Mtr7g0527 184 Gene3D Classic Zinc Finger 20 71 - -
Mtr7g0527 184 Gene3D Classic Zinc Finger 72 145 - -
Mtr7g0527 184 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Mtr7g0527 184 PANTHER ZINC FINGER PROTEIN ZAT12 11 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0527 Mtr-Chr7 8110922 8111757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0527 12 174 C2H2 Transcription Factor Family AT2G28710 45.614 1.38e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr7g0527 zf-C2H2_6 9.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0527 - - gmx:100500371 265.388