Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0390 ATGTTGGAGCAAGATTTCCTCACCACCACCTCAGCCACAGCCACTGTAAGGTCTGCGGGAACGTGGGCACGAACATGTGACACGTGCCGCTCGGCCCCATGCGCGGTTTTCTGCCGCGCAGACTCGGCATATTTATGTGCCGCGTGTGATGCACGCATCCACGCGGCAAACCGTGTAGCCTCGAGGCACGAACGCGTCTGGGTCTGTGAGGCCTGCGAGCGTGCCCCGGCGGCTTTTCTTTGTAAAGCTGATGCTGCTTCTCTTTGCTCCACTTGTGATGCTGATATCCACTCTGCTAACCCTCTTGCAAGCCGCCACCAACGTGTCCCGATTCTTCCAATTTCCGGTTACCTATACGGTCCTCCGGCCACCCTTTTAGGTGCCGAAGATGAAGGCTTCGTCCGCGGTGGTTGTGAGGTGGAGGAAGAGGAGGATGAAGGTGTTGATCATGATATGGAAGATGAAAATGAAGCAGCTTCATGGCTTTTGTTGAATCCTCTAAAGAACAACAATAACAATAGTAACAACAACATTAGCAATGATCATAATCAAGTGGCTAATAATGGATATTTGTTTAGTGGAGAAGTTGATGAGTATTTGGACCTTGTTGATTGTAATTCTTGTGGTGGTGATGAAAACACTTTCACTACCAATAATACTCATCATCATGATGAGTATAGTCAACAACAACAACAACAAGATCATTATGGTGTTCCTCAAAAAAGCTATGTTGGTGATAGTGTTGTTCCTGTTCAACAACAGCAGGTACAGAATTTTCAACTTGGGTTGGAATTTGAGTCTTCCAAAGCTGGATTCAGTTACAATGGTGGTTCTATTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACCATGACCTATTCAAGACCTCCAAAAGGAACAATTGACCTATTTTCAGGTCCTTCTATTCAAATGTCTTCCCATTTCTCTCCAATGGATAGAGAAGCAAGAGTCTTAAGGTACAGAGAGAAAAAGAAGACAAGAAAATTTGAGAAAACAATTAGGTATGCTTCAAGGAAAGCCTATGCAGAAACTCGACCGCGTATAAAAGGTCGATTCGCGAAGAGAACAGATGTAGAAGCTGAAGTTGATCAAATGTTTTCCACATCACTAATTACAGAAGTTGGATATGGAATTGTTCCCTCTTTCTGA 1191 0.4433 MLEQDFLTTTSATATVRSAGTWARTCDTCRSAPCAVFCRADSAYLCAACDARIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSTCDADIHSANPLASRHQRVPILPISGYLYGPPATLLGAEDEGFVRGGCEVEEEEDEGVDHDMEDENEAASWLLLNPLKNNNNNSNNNISNDHNQVANNGYLFSGEVDEYLDLVDCNSCGGDENTFTTNNTHHHDEYSQQQQQQDHYGVPQKSYVGDSVVPVQQQQVQNFQLGLEFESSKAGFSYNGGSISQSVSVSSMDVGVVPESTMTYSRPPKGTIDLFSGPSIQMSSHFSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTSLITEVGYGIVPSF* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0390 396 ProSiteProfiles Zinc finger B-box type profile. 21 68 IPR000315 GO:0008270
Mtr7g0390 396 SMART bboxneu5 21 68 IPR000315 GO:0008270
Mtr7g0390 396 SMART bboxneu5 69 111 IPR000315 GO:0008270
Mtr7g0390 396 Pfam B-box zinc finger 66 111 IPR000315 GO:0008270
Mtr7g0390 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 22 396 IPR045281 GO:0009909
Mtr7g0390 396 ProSiteProfiles CCT domain profile. 327 369 IPR010402 GO:0005515
Mtr7g0390 396 ProSiteProfiles Zinc finger B-box type profile. 64 111 IPR000315 GO:0008270
Mtr7g0390 396 Pfam CCT motif 327 369 IPR010402 GO:0005515
Mtr7g0390 396 CDD Bbox1_BBX-like 26 68 - -
Mtr7g0390 396 CDD Bbox1_BBX-like 68 111 - -
Mtr7g0390 396 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 22 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0390 Mtr-Chr7 6177737 6181336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0390 19 396 C2C2-CO-like Transcription Factor Family AT3G02380 55.076 5.82e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mtr7g0390 zf-B_box 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0390 - - qlo:115975874 457.988