Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0280 ATGGCGTTCTTTGGTAAAATGGGAAAGTTACTCAAGAATTCTGCAATCCAGCACATAAATCATGATTTATCTATGTCTACTCCTTTGGCATTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTATGTTGGAGGTATTTCGTATAGCACTGATGATGCGGGTCTCCGAGAAAGTTTTGCTCGCTATGGAGATGTTCTTGATGCAAGAGTTATCATAGACCGTGAACAAGGCAGGTCCAAAGGATTTGGCTTCGTAACTTTTGCAACAAGCGAGGAAGCATCTGCTGCCCTTCAGGCCATGGATAACCAGGAACTTCATGGTCGGACAGTACGAGTGAACTATGCTCAAGAAAGGCCACGCTCTGGGTATGGTGGTGGTGGCTATGGTGGAGACGGTGGTGGCTATAGTGGTGGTGGTGGTGAGTATGGTGGTGGCCACTGCTGA 447 0.4676 MAFFGKMGKLLKNSAIQHINHDLSMSTPLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQAMDNQELHGRTVRVNYAQERPRSGYGGGGYGGDGGGYSGGGGEYGGGHC* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0280 148 CDD RRM_HP0827_like 41 117 - -
Mtr7g0280 148 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 146 - -
Mtr7g0280 148 Gene3D - 30 147 IPR012677 -
Mtr7g0280 148 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Mtr7g0280 148 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Mtr7g0280 148 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 146 - -
Mtr7g0280 148 SUPERFAMILY RNA-binding domain, RBD 24 146 IPR035979 GO:0003676
Mtr7g0280 148 SMART rrm1_1 41 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0280 Mtr-Chr7 4231055 4234384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0280 39 126 Eukaryotic Initiation Factors Gene Family AT1G49760 37.363 9.39e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0280 K12741 - gmx:100807155 185.652