Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0279 ATGGCGTTCTTCGGTAAAATGGGAAAGTTACTCCAGAATTCTGCTGTCAAGCACATCAATCATGATTTATCTATGTCTACTCCTTCGTTATTTCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTATTGGAGGTGTTTCATATAGCACTGATGAAACTGGTCTCCGAGAAGCTTTTTCTCGCTATGGAGATGTTCTTGATGCAAAGATTATCATGGATCGTGATACAGGAAGGTCCCGAGGTTTTGGCTTCATAACTTTCGCAACGAGCGAGGAAGCATCCTCTGCCCTGCAGGCCATGGATAACAAGGAACTTGATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGGCGCGTCCTGGGTTTGGTGGCGGTGGTTATGGTGGCGGCGGTGGCTATGGCGGCGGCGGTGGCTATGGTGGTGGTGGTGGCTATAGTGGTGGTGGTGGAAATTATGGTGGTGGTGGCGGAAATTATGGTGGCGGAAATTATGGTGGCGGAAACTACGGTGGTGGTGGTGGTAGTACATATGGTCGCAATGATTATAACAGTAGTGGAAGCTATGCAAGTGGTGGTGCCCCAGACAGCTATACTGGTGGCCATGTCGGTACTACTTCTGCTGCTGGTGGTGAATTCAGCAGCAACTCTAATTTGGGATATGACGCTGGTAAGAATGAATTCGGTGAGCCGTTAGAAAACAACCATGTGCCAGAGAACAATGATCAATCTGATGACTATGCTGAGACCCGTAGATGA 762 0.4777 MAFFGKMGKLLQNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVNYATERARPGFGGGGYGGGGGYGGGGGYGGGGGYSGGGGNYGGGGGNYGGGNYGGGNYGGGGGSTYGRNDYNSSGSYASGGAPDSYTGGHVGTTSAAGGEFSSNSNLGYDAGKNEFGEPLENNHVPENNDQSDDYAETRR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0279 253 SUPERFAMILY RNA-binding domain, RBD 25 150 IPR035979 GO:0003676
Mtr7g0279 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Mtr7g0279 253 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 250 - -
Mtr7g0279 253 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 250 - -
Mtr7g0279 253 MobiDBLite consensus disorder prediction 204 223 - -
Mtr7g0279 253 SMART rrm1_1 41 114 IPR000504 GO:0003723
Mtr7g0279 253 PRINTS Eggshell protein signature 36 52 - -
Mtr7g0279 253 PRINTS Eggshell protein signature 125 140 - -
Mtr7g0279 253 PRINTS Eggshell protein signature 154 164 - -
Mtr7g0279 253 PRINTS Eggshell protein signature 186 204 - -
Mtr7g0279 253 Gene3D - 12 136 IPR012677 -
Mtr7g0279 253 MobiDBLite consensus disorder prediction 204 253 - -
Mtr7g0279 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0279 Mtr-Chr7 4225936 4229043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0279 30 126 C2H2 Transcription Factor Family AT2G19380 35.052 1.15e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0279 K12741 - gmx:100818300 237.654