Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0270 ATGGAAGGACATTCTCGGAAACATTGTGAAGTCAAAAAGGCCAAAGAATTTCTTAATGAAGTTAAACATAGATTTATTCAAGATAACAGGAGGGATAAGTATGATGATTTTCTGAAAGTCTTGAAGGATTACAAGACAAAAAGGATTGATGATGCAACTATCAGTAAATTATTGAATGGATTATTCGAAGGTCATAGAGATCTTATATCAAGATTGAACTACTTCATGCCTGATGGATTTAAGATCAAGCTTCCAAAAGAGGAGGAAGAATCTCTAGAACATTCTGAAGAAAAAAATGCCAAAGAATTTGTCAATGATGTTAAGTGTAGATTTATTCAAGTTAATCAGAGGGATAAGTGTGATAACTTTTTGAATGTCTTGAATGATTACAAGACACAAAGGATTGATGCTGCGAATCTCAGTAAATTATTAAAGGGATTATTTGAAGGTCATAGAGATCTTATATTAAGATTGAACTATTACATGCCTGATGGATATGCAATCAAGCTTCCATCGGAGGAGGAACAATCTCTGGAACATTGTGAAGCAAAAAATGCCAAAGAATTTTTGAATGAAGTTAAATGTAGATTTATTCAAGTTAATCAGAGGGAAAAGAATGATAACTTTCTGAATGTCTTGAAGGATTACAGGACACAAAGAATTGATGATGCAAATCTGGTTATAAAAATGAAGAAAATATTTGAAGGTCATAGTGATTTAATATCAAGATTAAACTACTTCCTACCTGATGGATATGAAATCAAGCTTCCATTGGAGGAGGAACAAGTTCATGTTAAATTGGAAGATGCTAAAAGTTCTTGA 822 0.3212 MEGHSRKHCEVKKAKEFLNEVKHRFIQDNRRDKYDDFLKVLKDYKTKRIDDATISKLLNGLFEGHRDLISRLNYFMPDGFKIKLPKEEEESLEHSEEKNAKEFVNDVKCRFIQVNQRDKCDNFLNVLNDYKTQRIDAANLSKLLKGLFEGHRDLILRLNYYMPDGYAIKLPSEEEQSLEHCEAKNAKEFLNEVKCRFIQVNQREKNDNFLNVLKDYRTQRIDDANLVIKMKKIFEGHSDLISRLNYFLPDGYEIKLPLEEEQVHVKLEDAKSS* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0270 273 Gene3D Paired amphipathic helix 99 163 IPR036600 GO:0006355
Mtr7g0270 273 Gene3D Paired amphipathic helix 185 249 IPR036600 GO:0006355
Mtr7g0270 273 PANTHER PROTEIN, PUTATIVE-RELATED 201 271 - -
Mtr7g0270 273 PANTHER PROTEIN, PUTATIVE-RELATED 1 143 - -
Mtr7g0270 273 PANTHER PROTEIN, PUTATIVE-RELATED 144 223 - -
Mtr7g0270 273 SUPERFAMILY PAH2 domain 180 252 IPR036600 GO:0006355
Mtr7g0270 273 PANTHER SIN3B-RELATED 144 223 IPR039774 GO:0003714
Mtr7g0270 273 PANTHER SIN3B-RELATED 1 143 IPR039774 GO:0003714
Mtr7g0270 273 PANTHER SIN3B-RELATED 201 271 IPR039774 GO:0003714
Mtr7g0270 273 SUPERFAMILY PAH2 domain 97 166 IPR036600 GO:0006355
Mtr7g0270 273 ProSiteProfiles PAH domain profile. 174 251 IPR003822 GO:0006355
Mtr7g0270 273 ProSiteProfiles PAH domain profile. 7 79 IPR003822 GO:0006355
Mtr7g0270 273 ProSiteProfiles PAH domain profile. 88 165 IPR003822 GO:0006355
Mtr7g0270 273 Pfam Paired amphipathic helix repeat 32 75 IPR003822 GO:0006355
Mtr7g0270 273 Pfam Paired amphipathic helix repeat 207 248 IPR003822 GO:0006355
Mtr7g0270 273 Gene3D Paired amphipathic helix 4 79 IPR036600 GO:0006355
Mtr7g0270 273 SUPERFAMILY PAH2 domain 6 78 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0270 Mtr-Chr7 4107364 4108534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0270 14 89 WRKY Transcription Factor Family AT4G12020 34.211 4.34e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr7g0270 PAH 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0270 K11644 - mtr:MTR_7g013380 529.635