Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g0161 ATGTCTAGTCGAAGGTCAAGGCAACAATCAGGAGGGTCTACTCGGATCTCTGATGACCAAATCATCGACCTTGTTTGCAAATTGCGCCAACTTGTTCCTGAGATTCGTAATAGGCGCTCTGACAAGGTACCAGCTTCTAAGGTCCTACAAGAAACCTGCAACTATATCAGAAACTTACAAAGAGAGGTTGATGATTTAAGCCTGAGATTGTCTCAGTTGTTGGCCACAATTGATTCTGATAGTGCTGAAGCTTCAATCATTAGGAGCTTACTTAACCAATGA 282 0.4255 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g0161 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Mtr7g0161 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 78 IPR036638 GO:0046983
Mtr7g0161 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Mtr7g0161 93 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Mtr7g0161 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mtr7g0161 93 Gene3D - 2 88 IPR036638 GO:0046983
Mtr7g0161 93 Coils Coil 49 76 - -
Mtr7g0161 93 CDD bHLH_AtPRE_like 12 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g0161 Mtr-Chr7 2630061 2633118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g0161 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 4.93e-34 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr7g0161 HLH 0.0002 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g0161 - - jre:109002575 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0161 7 2630061 2633118 Mtr3g0948 3 14824982 14826514 ECH
Mtr7g0161 7 2630061 2633118 Mtr7g0161 7 2630061 2633118 ECH
Mtr7g0161 7 2630061 2633118 Mtr6g0277 6 3334846 3337859 ECH
Mtr5g1584 5 17137996 17139346 Mtr7g0161 7 2630061 2633118 ECH
Mtr8g1776 8 26723975 26726283 Mtr7g0161 7 2630061 2633118 ECH
Mtr6g0277 6 3334846 3337859 Mtr7g0161 7 2630061 2633118 PCT