Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2420 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGTCATAATTCAAGGACTTGTAATTCATTAAGAGGAAGTGGTAGTTTTGTTGGAGTTAGACTTTTTGGTGTTCAACTTGATTTATCTTCTTCTTGTGTTTCCATGAAAAAGAGTTTTAGCATGGATTCTTTTCCTACTTCATCTTCTTCTCCTACTTCTTCCTTTTCTTCTTCAAGATTAACCATTGATGATAGAGCCTCTATTGGTTATCTTTCAGATGGTCTCATAGTTCGTACACAAGAAAGGAAAAAAGGAGTTCCATGGACAGAAGAAGAGCATAGAAAATTCCTTGTTGGACTTGAGAAGCTTGGAAAAGGAGATTGGAGGGGTATCTCTAGAAACTATGTGACTACAAGAACACCAACACAAGTTGCAAGCCATGCTCAAAAGTATTTTATTCGACTTGCAACCTTGAATAAGAAGAAGAGACGTTCAAGTCTCTTTGACATGGTTGGTAGTGGCAAGACAAACAAAACAGTTGATCCAAATAACAGTTCTAAAAGCAAGTCAGGAGATTCAGTTTGTAGACATGATCATGAAGTTGAGAAAGATGCAACTTTGTCACTACTAATAAACTCACTTCAACAACAAACCAAATCAGATGATTATGATATGCAAAAAATTGAAGATGATTCTGAAGAAGCAGAACATAAAGATGTTCCAGATTGGCTACATCCTCTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATGTAGCACCACCTGATCTTGAACTAACTCTGGCAGGGTCTAAGTCAAATAACATGGAACAAGATAAAACATCATCAAGTTCATTTCTTATTGGGCCAATTAGTGTCACTTAA 870 0.3609 MGRKCSHCGNIGHNSRTCNSLRGSGSFVGVRLFGVQLDLSSSCVSMKKSFSMDSFPTSSSSPTSSFSSSRLTIDDRASIGYLSDGLIVRTQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGKTNKTVDPNNSSKSKSGDSVCRHDHEVEKDATLSLLINSLQQQTKSDDYDMQKIEDDSEEAEHKDVPDWLHPLTKSLNMTLVIPNSSNVAPPDLELTLAGSKSNNMEQDKTSSSSFLIGPISVT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2420 289 PANTHER TRANSCRIPTION FACTOR KUA1 1 288 - -
Mtr6g2420 289 MobiDBLite consensus disorder prediction 267 289 - -
Mtr6g2420 289 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 288 - -
Mtr6g2420 289 ProSiteProfiles SANT domain profile. 99 147 IPR017884 -
Mtr6g2420 289 SMART sant 95 145 IPR001005 -
Mtr6g2420 289 MobiDBLite consensus disorder prediction 161 181 - -
Mtr6g2420 289 SUPERFAMILY Homeodomain-like 92 146 IPR009057 -
Mtr6g2420 289 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Mtr6g2420 289 CDD SANT 98 143 IPR001005 -
Mtr6g2420 289 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 94 145 IPR006447 GO:0003677
Mtr6g2420 289 Pfam Myb-like DNA-binding domain 98 143 IPR001005 -
Mtr6g2420 289 Gene3D - 97 149 - -
Mtr6g2420 289 ProSiteProfiles Myb-like domain profile. 91 143 IPR001005 -
Mtr6g2420 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 147 IPR017930 -
Mtr6g2420 289 MobiDBLite consensus disorder prediction 161 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2420 Mtr-Chr6 42456657 42458935 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr6g2420 Myb_DNA-binding 7.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2420 - - gmx:778052 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2420 6 42456657 42458935 Mtr6g2420 6 42456657 42458935 ECH