Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2416 ATGAAGACCGATGGTGAAGCTTGTAAAGTAAAATCTCAAATGCTCGAGACATTTGATTATGCATGGAACAAAGTTGATAACGGTAAACGACGGCCCAATGATATTCTTCAAATGCTGAACATAATTTCTTCAAACAAGTTGCCTATAACAAACGACAAGTTAGATGAAGCTGGAAATAATAGTAGTTTTGTTGACGAGAGTATCACAAAAAATGATGTTGGTAAGGCAAAGGTGGCTTTGGAAGTTGAAGTTAACCATCAGCTCGTAGACGACAAATTAGATGAAGCTGAAAATAATAGTAGTTTTGTTGACGAGAGTATCACAAAAAATGATATTGGTACGTCAGAGGTGGCTTTGGAAGCTGAGGTTAACCATCAGCTTGTAGATGACAACTTAGATGAAGCTAAAAATAATAGTAGTTTTGTTGACGAAAGTATCACTAAAATTGATGTCGGTATGTCGGAGGTGGTTTTGGAAGTTGAGCTTGACCATCAGCTCGCAGACGACAAATCAGATGAAGCTAAAAATAATATTAGTTTTGTTGACGAGAGTGTCATAAAAAATGATGTTGGTACATCAGAGGTGGTTTTGAAAGTTGAGGTTGACCATCAGCTCGCGGAAGATAAATCAGATGAAGCTGAAAATAATAGTTGTTTTGTTGACGAGAGTATCACAAAAAATGATTTTGGTACGTCAGAGGTGGCTTTGGAAGTTGTGGTGACTTTGGAAGCTGAGGTTGACCATCAACTCGCTGAGGCGTCTCCTTTAAAGAAGAAAGGGAAGAGTGATAAAGGCGAGACAACCAAGAAGAATGATGGTAGTATTTGTACAAAGCCACCAGCTGAGAAAAGAGTTAGCTGCCAAGAACATAAAGGAATGAGACTAAATGTGTTTAGTGCAAAAGCAATTAGAAGATCCAAGTCTGAATCAGAAATCTTGGCTGGGAGTTTTGTTGACGAGAGTATCACCAAAAATGATGATGGTACGTATGCGGTGGTTTTGCAAGCTAAGATTGACCATCAACTCGTTGAGGCATGTCCTTTAAAGAAGAAAGGGAAGAGTGATAAAGGCGAGGCCAACAAGAAGAATGTCGAGTGCGTTCTTGAGGTTGAGATCGGCGGCTCCTTGTGGAACAGGAACTTCGATCGTGCTGGCTTCGTGAAGGATCATTTCAACCTTTATGAAGATTTTGAGGCAACAAGGAAGTCTAATCACTCCAATATGTTTCATGATGCTAGTGTTTCTTGTTTGCGCTCTGTGGTGTTGCTTGAAGTGATGGAGGAAAAGTTTCAGGCTGTAAAATCGAATGCAGATAGGCTAAAGCAGGAGAACGAAGACTTGAAGTTGAGGGTTAAAACCTTGGAGGACCAGTTGAAGGAATCTCGCAACTCCTTAAAGACGACAAAGGATGAGAAAAAGAAAGTCGAGGAAGATAAGCGAGATGTTGAAGCCAAGTGCTTGGAGCTTAATAACAATTATGGTGCCATAAAGGGGGAGGTTAAGAAGGATGTTCAGAAGATTATCGAGTTTCAAGAGGGTGTTGAAAATGCAAAGAAAGGGTGGTTGCGAATATGGAAAAGGGGGAAGTTGAGAAGTCATGTTGTTATACCTAGATCTTGA 1620 0.4012 MKTDGEACKVKSQMLETFDYAWNKVDNGKRRPNDILQMLNIISSNKLPITNDKLDEAGNNSSFVDESITKNDVGKAKVALEVEVNHQLVDDKLDEAENNSSFVDESITKNDIGTSEVALEAEVNHQLVDDNLDEAKNNSSFVDESITKIDVGMSEVVLEVELDHQLADDKSDEAKNNISFVDESVIKNDVGTSEVVLKVEVDHQLAEDKSDEAENNSCFVDESITKNDFGTSEVALEVVVTLEAEVDHQLAEASPLKKKGKSDKGETTKKNDGSICTKPPAEKRVSCQEHKGMRLNVFSAKAIRRSKSESEILAGSFVDESITKNDDGTYAVVLQAKIDHQLVEACPLKKKGKSDKGEANKKNVECVLEVEIGGSLWNRNFDRAGFVKDHFNLYEDFEATRKSNHSNMFHDASVSCLRSVVLLEVMEEKFQAVKSNADRLKQENEDLKLRVKTLEDQLKESRNSLKTTKDEKKKVEEDKRDVEAKCLELNNNYGAIKGEVKKDVQKIIEFQEGVENAKKGWLRIWKRGKLRSHVVIPRS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2416 539 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 1 518 - -
Mtr6g2416 539 Coils Coil 79 99 - -
Mtr6g2416 539 Coils Coil 196 216 - -
Mtr6g2416 539 Coils Coil 118 138 - -
Mtr6g2416 539 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 1 518 IPR038909 GO:0003677|GO:0006355
Mtr6g2416 539 MobiDBLite consensus disorder prediction 253 271 - -
Mtr6g2416 539 MobiDBLite consensus disorder prediction 253 283 - -
Mtr6g2416 539 Pfam GIY-YIG domain-containing protein 1 36 - -
Mtr6g2416 539 Coils Coil 423 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2416 Mtr-Chr6 42428385 42430103 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Mtr6g2416 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2416 - - mtr:MTR_6g092480 1010.36