Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2371 ATGGGTAGGGCTCCATGTTGTGACAAATCAAAAGTGAAAAGAGGTCCATGGTCTAATGAAGAAGATGATATTCTTAAACACTACATTCAAGAAAATGGCAATGCTGGTAATTGGATATCTCTCCCCCTAAAAGCAGGCCTAAATCGTTGTGGGAAGAGTTGTCGTCTAAGATGGTTGAACTATTTAAGGCCTAATATCAAGCTTGGAGGTTTCACTAAGGAGGAAGACAACATTATCTGCACTCTTTTTAGCACCATAGGAAGCAGGTGGTCCTTTATAGCAGCACAATTACCAGGAAGAACAGATAATGATGTGAAAAATCACTGGAACACTAAACTAAAGAAAAAGTATGTAGCAGGAAACTCATCCACAAGCAGCACTATTTACACTTTCAACAATACTACTAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCAACTTGAAGCACCCTTTGTCTTTGATCAAAAACCCAACACACCTTGTTTTGACTCCTACAATTTTTTGGATTTGCATGAAACACCAATTAGTAATATTCCTTTACCAATTAAAATGGAATCAGAAGCTTTTTACACTGGAAGCAGTTTGAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTTTTTCAAGTGCACCTTTCTTAGAAGAACAAAATAATGATAATCAATGTTTTGAATATGACCATGATGATGCAATTCTTCTTGAAATGTTTCTTGATGATTTATTGAATCATGGACCCTCATCTGGATAA 768 0.3646 MGRAPCCDKSKVKRGPWSNEEDDILKHYIQENGNAGNWISLPLKAGLNRCGKSCRLRWLNYLRPNIKLGGFTKEEDNIICTLFSTIGSRWSFIAAQLPGRTDNDVKNHWNTKLKKKYVAGNSSTSSTIYTFNNTTSSDHFSSTLTFQPQLEAPFVFDQKPNTPCFDSYNFLDLHETPISNIPLPIKMESEAFYTGSSLSSSCSTTPTTKEISSFSSAPFLEEQNNDNQCFEYDHDDAILLEMFLDDLLNHGPSSG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2371 255 CDD SANT 71 113 IPR001005 -
Mtr6g2371 255 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr6g2371 255 Gene3D - 6 68 - -
Mtr6g2371 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mtr6g2371 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mtr6g2371 255 CDD SANT 16 62 IPR001005 -
Mtr6g2371 255 Gene3D - 70 139 - -
Mtr6g2371 255 PANTHER OS09G0431300 PROTEIN 1 213 - -
Mtr6g2371 255 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mtr6g2371 255 SMART sant 13 64 IPR001005 -
Mtr6g2371 255 SMART sant 67 115 IPR001005 -
Mtr6g2371 255 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr6g2371 255 PANTHER TRANSCRIPTION FACTOR RAX3 1 213 - -
Mtr6g2371 255 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mtr6g2371 255 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2371 Mtr-Chr6 41830848 41833320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2371 1 118 MYB Transcription Factor Family AT3G49690 75.424 2.58e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g2371 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2371 K09422 - gmx:778160 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2371 6 41830848 41833320 Mtr6g2371 6 41830848 41833320 ECH