Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2370 ATGATGCTGAGAGCTAATCCAACGGTTCATGTTCCTCCTTGGCCGAATCATGATGATCCAACAGCTGAGATTCTTTCTTCTTGTTTCGGTTATGATAACAATAACATTGCCGGTGATTTCACCGGCGCCGGAGATTACACTGCCGGAGATTTTTCCACCGGTGATTACTCTTCCGGTGATTACTATCTCCGAGAAGCACTTGCAGCGCTTCAACGTTATCTTCCGTCAAACGAGTTCAACGATTCTGATTTAGAATCTCCGGCGACGGCGGCGGCGGATTCAACGGTGGATGCATATTCATGCGATCATTTCCGCATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCATACGCACATCCCGGCGAGAAAGCACGCCGCCGTGATCCGAGGAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGTAACTGTAAGAAAGGTGACGCGTGTGAACACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCTGCACGTTACCGTACTCAGCCGTGTAAAGACGGAACCAGCTGTCGCCGGCGTGTTTGCTTCTTCGCTCACACGCCGGAACAGCTTCGTCTTAACGTTCAGCAGAGTCCATCTTCCTCACGGAGTGTTAATTCGCCTGATTCGTATGACGGTTCTCCGTTACGACAAATGGTTACTATAACGACGCCGCCAGAATCTCCACCGATGTCACCGATGGCGAGCGAGATGGTGGCGTCGTTACGGAATTTACAATTGGGTCGGATGAAAACTATGCCAATTAATAGAAATGTTACAATTGGGTCACCGGTTTTTGGTTCGGGTTCACCGGTTTTTGGGTCACCGCTTCGGTCTGGTTTTTTAAGTTTACCTAATACACCAACAAAAAAACCAGGTTTAGGCCGGGTTGGTGGGTTTGATTTATGGGATCAGAGTTGTGAAGAGGAGCCTATAATGGAGAGAGTTGAGAGTGGAAGAGATATTAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCATTGGAGAATGAGAATGGAAATTCGGGTTTGGGTTTGGAGTCGGGTCAACCCGGTCCAGATGTTGGGTGGGTTTGTGATTTGTTGAAGTGA 1134 0.4797 MMLRANPTVHVPPWPNHDDPTAEILSSCFGYDNNNIAGDFTGAGDYTAGDFSTGDYSSGDYYLREALAALQRYLPSNEFNDSDLESPATAAADSTVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLNVQQSPSSSRSVNSPDSYDGSPLRQMVTITTPPESPPMSPMASEMVASLRNLQLGRMKTMPINRNVTIGSPVFGSGSPVFGSPLRSGFLSLPNTPTKKPGLGRVGGFDLWDQSCEEEPIMERVESGRDIRAKMFEKLSKENSLENENGNSGLGLESGQPGPDVGWVCDLLK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2370 377 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 5 376 - -
Mtr6g2370 377 MobiDBLite consensus disorder prediction 206 230 - -
Mtr6g2370 377 ProSiteProfiles Zinc finger C3H1-type profile. 144 170 IPR000571 GO:0046872
Mtr6g2370 377 PANTHER UNKEMPT FAMILY MEMBER 5 376 IPR045234 -
Mtr6g2370 377 MobiDBLite consensus disorder prediction 346 367 - -
Mtr6g2370 377 Gene3D - 140 215 - -
Mtr6g2370 377 SMART c3hfinal6 178 201 IPR000571 GO:0046872
Mtr6g2370 377 SMART c3hfinal6 143 169 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2370 Mtr-Chr6 41813820 41815354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2370 99 205 C2H2 Transcription Factor Family AT5G12850 73.832 5.45e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr6g2370 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2370 - - aprc:113867365 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2370 6 41813820 41815354 Mtr6g2370 6 41813820 41815354 ECH