Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2361 ATGAAAAATCAAAACACCATCATTCTTGTTTTTCTCTTTCTCATTCTCCATTTAGCTACAACAAAAGCTGGTTTTGGTGTTGGTGGTAGTGTTGGTGTAGGTGTAGGTGTTGGAGGTGGAGTTGTTTGGGGAGTAGGAGGTGGGAATAGTAACCAAAATCCAAAGTCCTATGAATCTCCAACATCAAAGATGGAATCAGCTTACACAGTTCTTCAAGCATGGAAATCTGCAATCACTGATGACCCTTTAAAGATACTAGATTCTTGGAATGGTTCAAATGTATGTTCATATAAAGGAATCTTCTGTGCAAATCCTGAAAATGGAATAACTTCTACAACAGCTTCTACTTCAGTAGTTCTTGCTGGAATAGATCTAAACCATGCAAACCTTGAAGGAACACTTGTACAAGAATTATCATTACTCACTGATATGTCATTACTTCATCTCAATAGTAACAGATTCAGTGGAACAGTTCCTGAAACATTCAAAGATCTTGTTTCACTTCAAGAGTTAGACCTAAGTAATAACCAACTTTCAGGTTCTTTTCCTTTGGTTACTTTATATATGCCAAGTCTCATATACTTGGATATTAGGTTTAACTCTTTCTCAGGTTCATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCAATATTTCTCAACAACAATGAGTTTGAAGGTGAAATACCTACAAACTTAGGTAATTCACCTGCTTCTGTGATAAACTTAGCTAATAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATCAAAGAGATTTTGTTTCTGAATAATCAGTTAACTGGTTGTATACCTGAAGGAGTTGGACTTTTTACTGAGATGGAAGTTCTTGATGTGAGTTTCAATTCATTGATGGGTCATTTACCTGATACATTATCATGTTTACAGAATATAGAAGTGCTTAACTTGGCTCATAATCAGCTTTCTGGAGAGTTATCAGATATAATCTGTTCTTTGAGGAGTTTGGCTAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGTTCTAAGCTGTTTTTTAGGAATGTTGGTTTTGATTTTTCACTTAATTGTATTCCTGGGAGGAACATGCAAAGACCTCAACCTGAGTGTTCTATGATCCCAGGTGGTAGCTTAAGTTGTCTCAGAATTCCAACACCAAAACCTCTTGTTTGTGGTTCTATGTCTGTAAGTACCTCTGAGAACGCTCGATTCTCTTCACAATCACATTCACATTTTTCAAAATCACAATCTCCTCCGTGA 1293 0.3581 MKNQNTIILVFLFLILHLATTKAGFGVGGSVGVGVGVGGGVVWGVGGGNSNQNPKSYESPTSKMESAYTVLQAWKSAITDDPLKILDSWNGSNVCSYKGIFCANPENGITSTTASTSVVLAGIDLNHANLEGTLVQELSLLTDMSLLHLNSNRFSGTVPETFKDLVSLQELDLSNNQLSGSFPLVTLYMPSLIYLDIRFNSFSGSLPQELFNKNLDAIFLNNNEFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLFFRNVGFDFSLNCIPGRNMQRPQPECSMIPGGSLSCLRIPTPKPLVCGSMSVSTSENARFSSQSHSHFSKSQSPP* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2361 430 ProSiteProfiles Leucine-rich repeat profile. 167 188 IPR001611 GO:0005515
Mtr6g2361 430 Gene3D Ribonuclease Inhibitor 237 359 IPR032675 -
Mtr6g2361 430 Gene3D Ribonuclease Inhibitor 65 236 IPR032675 -
Mtr6g2361 430 PANTHER LRR/EXTENSIN 3 430 - -
Mtr6g2361 430 SMART LRR_typ_2 284 307 IPR003591 -
Mtr6g2361 430 SMART LRR_typ_2 308 332 IPR003591 -
Mtr6g2361 430 SMART LRR_typ_2 165 184 IPR003591 -
Mtr6g2361 430 SMART LRR_typ_2 141 164 IPR003591 -
Mtr6g2361 430 SMART LRR_typ_2 189 213 IPR003591 -
Mtr6g2361 430 Pfam Leucine rich repeat N-terminal domain 68 102 IPR013210 -
Mtr6g2361 430 SUPERFAMILY L domain-like 66 354 - -
Mtr6g2361 430 Pfam Leucine rich repeat 146 201 IPR001611 GO:0005515
Mtr6g2361 430 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 430 - -
Mtr6g2361 430 PRINTS Leucine-rich repeat signature 168 181 - -
Mtr6g2361 430 PRINTS Leucine-rich repeat signature 308 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2361 Mtr-Chr6 41673831 41675876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2361 43 393 Leucine-rich Repeat extension Gene Families AT3G24480 47.765 3.21e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2361 - - gmx:100790827 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2361 6 41673831 41675876 Mtr6g2361 6 41673831 41675876 ECH