Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2344 ATGTCAAACATGCATTACATTTTCAGCATGTTGTTATTTCTTCTTCTTCTTGTACAAAATCTGACCACAATACATTGTCATACAAAAGGAATTCGACCGATACGTTCTGCTCGAAACGGTTTATCAACCTACAATACAACAAGAGCAGACTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTGGTCTCAAACACACTGTTTACAAGGCTGCAAAAAATAAGCTATTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTTGGAGATTTTGATACAATTCAAAATGCCATTGATTCTCTTCCTTCCATCAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGAGTTTACACGGAGAAAGTTAACATTCCTCCTTTAAAATCCTTCATAACCATAGAAGGAGATGGTGCAGATACAACAATTGTTCAATGGGGTGACACTGCTGCAACACCTGGTCCAAGAGGGAATCCATTGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTTTTCCTCTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTAGCATTTAGAATTTCAGCAGACACAGCATCATTCTTAGGGTGTAGATTTTTGGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATATTTGGCAATGCTCTTTCTCTATTTGAGGGATGTCACGTGCATGCAATAGCAAGAAATACAGGAGCACTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTAAACTGTAAGGTCACGGGGTCAGGAGCACTATACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTGTCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGGTGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACAGGACCTGGAGCAAGTTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAAGAAGCTAGACCTTTTCTTTCACTTACTTTTATTGATGGGACTGAATGGATCAATTTTTAG 1149 0.3847 MSNMHYIFSMLLFLLLLVQNLTTIHCHTKGIRPIRSARNGLSTYNTTRADLAEQQFMKWVSFVGGLKHTVYKAAKNKLFASYTLHVDKNPSFGDFDTIQNAIDSLPSINLVRVVIKVHAGVYTEKVNIPPLKSFITIEGDGADTTIVQWGDTAATPGPRGNPLGTYGSATFAVNSPYFIAKNITFKNTFPLPAPGAIGKQAVAFRISADTASFLGCRFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGASFAGRVSWSRELTDEEARPFLSLTFIDGTEWINF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2344 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 380 - -
Mtr6g2344 382 SUPERFAMILY Pectin lyase-like 80 381 IPR011050 -
Mtr6g2344 382 Gene3D - 79 382 IPR012334 -
Mtr6g2344 382 Pfam Pectinesterase 93 376 IPR000070 GO:0030599|GO:0042545
Mtr6g2344 382 ProSitePatterns Pectinesterase signature 2. 239 248 IPR033131 -
Mtr6g2344 382 PANTHER PECTINESTERASE 1 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2344 Mtr-Chr6 41442866 41447901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2344 2 380 Carbohydrate Esterase AT5G47500 41.579 4.31e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2344 K01051 - gmx:100793314 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2344 6 41442866 41447901 Mtr6g2344 6 41442866 41447901 ECH