Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2338 ATGAAAAAATCCATCATGTCAATTCTTCTCTTCATTTTCTTTTTCATCTATGCAAATTGTGAATCTCAGCTATACAATCAAGAACATGAAATCCTATTAAGCATAAAAAACCATTTCCAAAATCCATCATTCCTTAGTCATTGGACAAAATCAAACACTTCATCACATTGTTTATGGCCAGAAATCCTTTGCACAAAGAATTCAGTCACTTCACTTTCAATGATCAATAAGAACATAACACAAACAATACCGCTTTTCCTATGTGAACTCAAAAACCTCACTTACATTGATTTTCAATACAATTATATTCCAAATGAGTTTCCAACATCCTTATATAATTGTTCCAAGATTGAACATCTTGATCTTTCAGATAACTTCTTTGTCGGTAACATTCCGAATGATATCGATCGGTTGGCCAGTCTGCAGTTCCTTAGCCTTGGAGCAAACAACTTTTCAGGTGATATTCCAATGAGTATTGGTAAGTTGAGGAATTTGAAAAGTCTTCGACTTTATGAATGTCTTTTCAATGGTAGTATTGCTAATGAAATTGGTGATTTGTTAAATCTCGAAACACTGTCAATGTTCTCAAATAGTATGCTACCTAGGACAAAGTTGCCATCTAGTTTTACTAAGTTGAAGAATTTAAGGATGTTTCATATGTATGACTCCAACTTGTTTGGTGAGATTCCTGTAACAATTGGTGAAATGATGGCTTTGGAGTATTTGGATTTATCAGGAAATTTTTTGAGTGGAAAAATTCCAAATGGTTTGTTCATGCTAAAGAATTTGAGCATAGTGTACCTTTACAGAAATAGTCTCTTTGGAGAGATACCAAGTTTGGTTGAAGCATTGAATTTGACAGAAATTGATCTTTCAGAGAATAATCTTGCAGGGAAAATACCAAATGATTTTGGAAAGCTCCAAAGTTTAACATGGTTGTATTTGTACATGAACAATTTGTCAGGGGAGATTCCCCATGGTATAGGAAATCTTAAATCTTTAAAAGGTTTCTATGCTTTTATAAACAAGTTTTCAGGTACACTTCCTTCTGATTTTGGTCTTCACTCAAAGCTTGAATATTTTCGAATTGAAGTCAACAATTTTAAGGGAAAGTTACCAGAGAACTTCTGTTATCATGGTAACTTACAAGTTTTCACTGCATATGAAAATCATTTAAGTGGTGAGTTGCCAAAATCAATTGGAAATTGTAGTAACTTGCTTGTGCTGGAAATTTACAAGAATGAATTTTCTGGTAAAATTCCTAGTGGACTTTGGAATATGAATTTGGTGATTTTCATGATAAGTCATAATAAGTTCAATGGTGAAATTCCTCAAAATTTGTCTTCAAGTATTTCAGTTTTTGATATAAGTTACAATCAATTTTATGGTGGAATTCCAATTGGAGTATCTTCTTGGACTAGTGTGGTTGAGTTTATAGCAAGCAAGAATTATCTTAATGGAAGTATTCCTCAAGAGTTAACAACTCTTCCTAATCTTGAAAGATTGTTGCTTGATCAAAACCAGCTAAAAGGGTCACTTCCATCAGATGTAATATCATGGAAATCCTTGGCGACTTTGAATTTGAGCCAAAATCAACTTAATGGACAAATTCCAATTTCAATTGGTCATTTACCTTCCCTTAGCGTTCTTGATTTATCAGAAAATCAATTCTCAGGCGAAATACCTCCGATACTCACACATCTCAGAAATCTCAATCTCAATCTATCATCCAATCATTTAACAGGAAGAGTTCCAACTGAATTTGAAAATTCAGCTTATGATAGAAGCTTTTTGAACAATTCAGATTTATGTGTTGATACACAAGCATTGAACCTCACCCATTGCAAGTCTGGCCTTAAAAAACATTGGTTTCTTGGTTTGATTATTAGCCTAATTGTGGTGACTTTGTTGTTCGTTTTGTTGGCATTGTTCAAGATCATCAAACGTTACAGAAAAAGAGAACCAACATTGGAAAATTCATGGGAGCTCATTTCATTTCAAAGGCTGAGTTTCACAGAGTCAACCATAGTTTCCTCAATGACAGAACAGAATATCATTGGAAGTGGTGGATTTGGAACGGTATACCGCGTTCCAGTCGACGGTTTAACCTATGTTGCTGTGAAAAAAATCAAGAGTAACAAAAATTCAAGGCAACAGCTCGAAGCTTCGTTTCGGGCGGAAGTTAAAATATTGAGCAATATTCGACATCGAAACATTGTGAAGTTGTTATGTTGTATCTCTAATGAGGATTCTATGATGCTTGTATATGAGTATTTGGAACACAGTAGCCTAGACAAGTGGCTGCACAACAAAAATGAGTCATTAGCTATGTTGGATTCGGCGCAACATGTCGTCCTCGATTGGCCAAAGCGATTGCGAATAGCTACTGGTATTGCTCATGGTTTGTGCTACATGCACCATGATTGCTCGCCTCCAATAATTCATCGCGATATAAAAACAAGCAACATACTTTTGGATTCTGAATTCAATGCAAAAGTTGCTGATTTTGGCTTTGCTAGATTCTTAACGAAGCCAGGACAGTTTAACACCATGTCAGCTTTGGTTGGATCGTTTGGTTATATGGCTCCAGAATATGTTCAAACAACTAGAGTCAATGAAAAGATTGATGTCTTCAGCTTTGGTGTTATCCTATTGGAACTTACAACTGGTAAAAAAGCTACTCGTGGTGACGAGTATTCATCTCTTGCACAATGGGCTTGGCGCCATATTCAAGCAGAAAGCAATATAATAGAGTTGCTTGACAATGAAGTAATGGAACAAAGTTGTTTGGATGAAATGTGCTGTATTTTCAAACTTGGGATAATGTGTACTGCTACACGTCCTTCTAGTAGACCTTCCATGAAGAAGGTGTTACACACATTGCTTAGAAGTGAAGTAGGGATTGTGTTCGGACAGAGGAATGATATTGCCGGGGAATATGACATTGTTCCATTTCATTAA 2961 0.3543 MKKSIMSILLFIFFFIYANCESQLYNQEHEILLSIKNHFQNPSFLSHWTKSNTSSHCLWPEILCTKNSVTSLSMINKNITQTIPLFLCELKNLTYIDFQYNYIPNEFPTSLYNCSKIEHLDLSDNFFVGNIPNDIDRLASLQFLSLGANNFSGDIPMSIGKLRNLKSLRLYECLFNGSIANEIGDLLNLETLSMFSNSMLPRTKLPSSFTKLKNLRMFHMYDSNLFGEIPVTIGEMMALEYLDLSGNFLSGKIPNGLFMLKNLSIVYLYRNSLFGEIPSLVEALNLTEIDLSENNLAGKIPNDFGKLQSLTWLYLYMNNLSGEIPHGIGNLKSLKGFYAFINKFSGTLPSDFGLHSKLEYFRIEVNNFKGKLPENFCYHGNLQVFTAYENHLSGELPKSIGNCSNLLVLEIYKNEFSGKIPSGLWNMNLVIFMISHNKFNGEIPQNLSSSISVFDISYNQFYGGIPIGVSSWTSVVEFIASKNYLNGSIPQELTTLPNLERLLLDQNQLKGSLPSDVISWKSLATLNLSQNQLNGQIPISIGHLPSLSVLDLSENQFSGEIPPILTHLRNLNLNLSSNHLTGRVPTEFENSAYDRSFLNNSDLCVDTQALNLTHCKSGLKKHWFLGLIISLIVVTLLFVLLALFKIIKRYRKREPTLENSWELISFQRLSFTESTIVSSMTEQNIIGSGGFGTVYRVPVDGLTYVAVKKIKSNKNSRQQLEASFRAEVKILSNIRHRNIVKLLCCISNEDSMMLVYEYLEHSSLDKWLHNKNESLAMLDSAQHVVLDWPKRLRIATGIAHGLCYMHHDCSPPIIHRDIKTSNILLDSEFNAKVADFGFARFLTKPGQFNTMSALVGSFGYMAPEYVQTTRVNEKIDVFSFGVILLELTTGKKATRGDEYSSLAQWAWRHIQAESNIIELLDNEVMEQSCLDEMCCIFKLGIMCTATRPSSRPSMKKVLHTLLRSEVGIVFGQRNDIAGEYDIVPFH* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2338 986 Pfam Protein kinase domain 682 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2338 986 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515
Mtr6g2338 986 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Mtr6g2338 986 Pfam Leucine Rich Repeat 239 257 IPR001611 GO:0005515
Mtr6g2338 986 Gene3D Phosphorylase Kinase; domain 1 658 758 - -
Mtr6g2338 986 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 7 986 - -
Mtr6g2338 986 Gene3D Transferase(Phosphotransferase) domain 1 759 969 - -
Mtr6g2338 986 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 7 986 - -
Mtr6g2338 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Mtr6g2338 986 Gene3D Ribonuclease Inhibitor 469 612 IPR032675 -
Mtr6g2338 986 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Mtr6g2338 986 SUPERFAMILY L domain-like 253 598 - -
Mtr6g2338 986 SMART LRR_typ_2 496 520 IPR003591 -
Mtr6g2338 986 SMART LRR_typ_2 307 331 IPR003591 -
Mtr6g2338 986 SMART LRR_typ_2 90 114 IPR003591 -
Mtr6g2338 986 SMART LRR_typ_2 544 568 IPR003591 -
Mtr6g2338 986 SMART LRR_typ_2 236 260 IPR003591 -
Mtr6g2338 986 SMART serkin_6 680 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2338 986 Gene3D Ribonuclease Inhibitor 283 374 IPR032675 -
Mtr6g2338 986 SUPERFAMILY Protein kinase-like (PK-like) 670 961 IPR011009 -
Mtr6g2338 986 Gene3D Ribonuclease Inhibitor 178 282 IPR032675 -
Mtr6g2338 986 Gene3D Ribonuclease Inhibitor 375 468 IPR032675 -
Mtr6g2338 986 Gene3D Ribonuclease Inhibitor 25 177 IPR032675 -
Mtr6g2338 986 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Mtr6g2338 986 Pfam Leucine rich repeat 497 557 IPR001611 GO:0005515
Mtr6g2338 986 ProSiteProfiles Protein kinase domain profile. 680 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g2338 986 SUPERFAMILY L domain-like 33 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2338 Mtr-Chr6 41362915 41367423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2338 28 961 Receptor kinase-like Gene Family AT5G25930 49.366 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr6g2338 Pkinase 7.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2338 - - mtr:MTR_6g088770 1397.49