Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2330 ATGGGTTCTAAGAAAGAGGGTGAGGTGATGAAAGTAAAAGAGGGAGGTTCAATAGGCATAATTTTGAGATATGGTGATTGGATTGATGTAGTTCTAATGTTGATTGGTGCTTTGGGAGCAATAGGAGATGGAATGTCAACAAATGTTTTGCTTCTCTTTGCTAGCCGTATCATGAACAGCTTAGGTGGTAGTAATGATGATAATAGTGAGACTTCCATGTCTGAGGTTGAAAAGTGCAGCTTATATTTTGTGTACTTGGGATTGGTGGCTTTGCTGGTGGCTTTCATGGAAGGATATTGTTGGAGCAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGTTACAATTATATGGAAGCTGTACTTAGACAAGAAGTTGGGTTTTTTGATTCAGAAGAAACAAATACTTCTGAAATCATTGATAGCATATCAAAAGATACTTCTCTTATACAAGAAGTTTTAAGTGAAAAGGTGCCTTTATTTTTGATGCAATCATCGTCATTCATATCAGGGATAGCCTTTGCAACATACTTCTCATGGAGATTAGCATTAGTAGCATTTCCAACTCTTCTTCTACTAATAATCCCTGGCATGATATATGGAAAATACCTAATCTATTTATCAAAATCATCAATGAAAGAATATGGCAAAGCAAATGCAATTGTACAACAAGCCCTAAGTTCAATAAAAACTGTGTATTCATTCACTGCTGAAAAGAGAATAATGGAGAGATATTCAGATATATTAGATAGAACTTCAAAGCTTGGAATCAAACAAGGTATAGCTAAAGGTCTTGCTGTTGGAAGCACAGGTTTATCTTTTGCAATTTGGGCTTTTCTTGCTTGGTATGGAAGTCATTTGGTTATGTATAAAGGTGAAAGTGGTGGAAGAATCTATGCTGCTGGAATTTCCTTCATAATGAGTGGATTATCCTTGGGAGTGGTACTTCCAGATTTAAAGTACTTCACAGAAGTATCAGTAGCTGCATCAAGAATATTTGCTATGATTGATAGAACACCAGAAATTGATAGTGAAGATACAACAAAAGGAATTATATTAGAAACCATAAGTGGCAAATTAGATTTTGAACATGTGAAATTCACATACCCTTCACGTCAAGAAAGTGTTGTACTAAGTGATTTTAATCTCAAAATTGAAGCTGGAAAAACTGTTGCACTAGTTGGTGCAAGTGGAAGTGGAAAATCAACAGCAATAGCATTAGTACAAAGATTTTATGATGCAAATGAAGGTGTTGTTAAGGTTGATGGTTTTGATATAAAGAGTTTACAATTGAAATGGATTAGAGGGAAAATGGGACTTGTGAGTCAAGAACATGCTATGTTTGGAACATCTATTAAGGAAAATATTATGTTTGGGAAAAATGATGCTACTATGGATGAAATTGTTGCTGCTTCTTCTGCTGCCAATGCTCATAATTTCATTAGGCAACTTCCTGAAGGTTATGAAACTAAGATTGGAGAAAGAGGTGCACTTCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCAAGAGCTATCATAAAAAATCCAGTAATTCTTCTGCTTGATGAAGCAACTAGTGCACTTGACTCTGAATCTGAATTATTGGTCCAAAATGCCCTTGATCAAGCCTCAATGGGGAGGACTACTTTGGTTGTTGCTCACAAGCTATCAACAATTAGAAATGCAGACCTAATAGCAGTTGTGAGCAATGGTTGCATCATAGAAAGTGGCACACACAATGAACTCATCAACACACCAAATGGACACTATGCAAAATTAGCAAAATTACAAACACAATTAAGCATTAATGATGATCAAGATCAAAATCAAAATCAAGAACAAAGCATTCTTCTTTCTGCAGCAAGAAGTAGTGCAGGTAGAACAAGCACTGCAAGATCAAGCCCTTTAATCTTACCAAAATCACCATTACCTAATGATATAATCATATCTCAAGTATCTCATTCCCATTCTCATCCATCACCTTCATTTTCAAGGCTTCTTTTCTTGAATTCTCCCGAATGGAAACAAGGGCTAATTGGAACACTCTCAGCTATAGCAAATGGTTCGATTCAACCTTTATATGCGTTAACAATCGGTGGCATGATTTCGGCTTTTTTCGCTAAAAGTCATCAAGAAATGAAACACAGAATCATGAACTATTCATTGATTTTCACTGCTTTGTCGGTTGCTTCTATTACTCTCAATCTCTTTCAACACTACAATTTTGCTTATATGGGAGCAAAGTTAACGAAAAGGATAAGGCTGTGTATGTTGGAAAAGATATTAACCTTTGAAACTGCTTGGTTTGATGAGGAAAAAAACTCTAGTGGAGCATTATGTTCAAGGTTGAGTAACGAAGCTTCGATGGTGAAATCGCTCGTTGCTGATAGAGTTTGTTTACTTGTTCAAACAGCTTCAGCCGTCACAATCGCGATGATCATAGGTCTTGTTGTAGCTTGGAAGCTAGCACTTGTTATGATAGCAGTTCAACCGCTTACAATACTTTGTTTCTATACGCGAAAAGTTTTGCTTTCTACACTTTCAACTAAATTCGTTAAGGCGCAGAATCAAAGCACACAGATTGCTGTCGAGGCGGTTTATAATCACAGAATTGTAACTTCTTTTGGAAGCATCACAAAAGTTTTGAGACTGTTCGACGAGGCGCAAGAGGCGCCGAGGATGGAAGCTAGGAAGAAAGCTTGGCTAGCTGGCATTGGTATGGGATCTGCTCAGTGTTTAACTTTTATGTGTTGGGCTTTGGATTTTTGGTATGGAGGTAAATTGGTCGAAAAGAGAGAAATTTCTTCAGGTGATGTGTTCAAAACTTTTTTTGTTTTGGTGAGTACCGGAAAAGTTATAGCTGAAGCTGGTAGCATGACTTCTGATCTTGCTAAAAGCTCAACAGCAGTTGCATCAGTTTTTGAAATTCTTGATAGACAATCTCTTATTCCTAAGGCTGGAGAAGAAACTAATGGAATCAAGTTGGAAAAGCTAAGTGGAAAAATAGAGTTAAAGAATGTTGATTTTTCATATCCAAGCAGAGCAAAAACACCGATTTTGCGCAAATTTTGCTTAGAGGTAAGACCTGGAAAAAGTGTTGGACTAGTTGGAAAAAGTGGATGTGGAAAATCAACTGTTATTGCATTAATACAAAGATTCTATGATGTTGAAAGAGGATCAGTGAAAGTTGATAATGTGGATTTAAGAGAATTAGATATTCATTGGTATAGACAACATACTGCATTAGTAAGTCAAGAACCTGTGATATATTCTGGTAGCATACGTGACAATATTTTGTTTGGAAAACAAGATGCAAGTGAAAATGAAGTTGTTGAGGCTGCTAGGTCTGCAAATGCTCATGACTTCATATCATCATTGAAAGATGGATATGAAACTGAATGTGGAGAAAGGGGGGTTCAATTATCAGGAGGACAAAAGCAAAGAATAGCAATTGCAAGGGCTATACTTAGAAATCCAATCATACTTCTACTAGATGAAGCAACAAGTGCTTTGGATGTGCAATCAGAACAAGTTGTGCAAGAAGCACTTGATAGGATTATGGTAGGAAGAACTACCATTGTTGTGGCACATAGACTTAACACAATCAAAGAACTTGACTCAATTGCTTATGTGTTAGAAGGGAAGATTGTGGAACAAGGAAGCTATTCTCAGCTTAAGCACAAGAGAGGTGCTTTTTTCAACCTTGCCAATCATCAAATTCAAACTTAG 3729 0.3674 MGSKKEGEVMKVKEGGSIGIILRYGDWIDVVLMLIGALGAIGDGMSTNVLLLFASRIMNSLGGSNDDNSETSMSEVEKCSLYFVYLGLVALLVAFMEGYCWSKTSERQVLRIRYNYMEAVLRQEVGFFDSEETNTSEIIDSISKDTSLIQEVLSEKVPLFLMQSSSFISGIAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSMKEYGKANAIVQQALSSIKTVYSFTAEKRIMERYSDILDRTSKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGISFIMSGLSLGVVLPDLKYFTEVSVAASRIFAMIDRTPEIDSEDTTKGIILETISGKLDFEHVKFTYPSRQESVVLSDFNLKIEAGKTVALVGASGSGKSTAIALVQRFYDANEGVVKVDGFDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKNDATMDEIVAASSAANAHNFIRQLPEGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVVSNGCIIESGTHNELINTPNGHYAKLAKLQTQLSINDDQDQNQNQEQSILLSAARSSAGRTSTARSSPLILPKSPLPNDIIISQVSHSHSHPSPSFSRLLFLNSPEWKQGLIGTLSAIANGSIQPLYALTIGGMISAFFAKSHQEMKHRIMNYSLIFTALSVASITLNLFQHYNFAYMGAKLTKRIRLCMLEKILTFETAWFDEEKNSSGALCSRLSNEASMVKSLVADRVCLLVQTASAVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSITKVLRLFDEAQEAPRMEARKKAWLAGIGMGSAQCLTFMCWALDFWYGGKLVEKREISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRQSLIPKAGEETNGIKLEKLSGKIELKNVDFSYPSRAKTPILRKFCLEVRPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKVDNVDLRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDASENEVVEAARSANAHDFISSLKDGYETECGERGVQLSGGQKQRIAIARAILRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVLEGKIVEQGSYSQLKHKRGAFFNLANHQIQT* 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2330 1242 SMART AAA_5 386 572 IPR003593 -
Mtr6g2330 1242 SMART AAA_5 1029 1221 IPR003593 -
Mtr6g2330 1242 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1239 IPR039421 -
Mtr6g2330 1242 CDD ABC_MTABC3_MDL1_MDL2 1002 1239 - -
Mtr6g2330 1242 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524
Mtr6g2330 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Mtr6g2330 1242 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524
Mtr6g2330 1242 Gene3D - 349 598 IPR027417 -
Mtr6g2330 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 597 IPR027417 -
Mtr6g2330 1242 CDD ABC_MTABC3_MDL1_MDL2 360 597 - -
Mtr6g2330 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Mtr6g2330 1242 Gene3D ABC transporter type 1, transmembrane domain 649 987 IPR036640 GO:0005524|GO:0016021
Mtr6g2330 1242 Gene3D ABC transporter type 1, transmembrane domain 21 614 IPR036640 GO:0005524|GO:0016021
Mtr6g2330 1242 Gene3D - 992 1242 IPR027417 -
Mtr6g2330 1242 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 22 1239 - -
Mtr6g2330 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Mtr6g2330 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Mtr6g2330 1242 SUPERFAMILY ABC transporter transmembrane region 665 978 IPR036640 GO:0005524|GO:0016021
Mtr6g2330 1242 SUPERFAMILY ABC transporter transmembrane region 29 342 IPR036640 GO:0005524|GO:0016021
Mtr6g2330 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1239 IPR027417 -
Mtr6g2330 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2330 1242 Pfam ABC transporter transmembrane region 34 296 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2330 1242 Pfam ABC transporter transmembrane region 678 948 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g2330 1242 Pfam ABC transporter 377 526 IPR003439 GO:0005524
Mtr6g2330 1242 Pfam ABC transporter 1023 1169 IPR003439 GO:0005524
Mtr6g2330 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2330 Mtr-Chr6 41260656 41271442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2330 21 1239 Calmodulin-binding Proteins AT2G36910 42.194 0.0 943
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2330 K05658 - gmx:100801088 2051.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g2330 6 41260656 41271442 Mtr6g2330 6 41260656 41271442 ECH