Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g2320 ATGGCTAGTAGCAGCAACTCATCTTTAGCTCTTGTAACTTCTTCAAAGAAAAATTATTATGATGTGTTTGTCACCTACAGAGGTGAAGACACTCGCAACAATTTGACTGATTTTCTTTTTGATGCCCTTGAATCAAAAGGCATTATGGTATTTCGGGATGACATTAATCTTCAAAAAGGTGAATATATAGGATCTGAGCTTCTTCGAGCAATCGAAAGATCTCATGTTTACGTAGCAGTCTTCTCAAGAAACTATGCTTCCTCAACATGGTGCCTTCAAGAATTAGAGAAGATTTGTGAATGCATTGAGGGATTAGAAAAACATGTTCTTCCTATTTTTTATGATGTTGATCCTTCTGAGGTACGAAAGCAAAGTGGAATTTATTGGGAAGCTTTTGTCAAACATGAACAAAGATTCCAACAAGACTTTCAAATGGTGTCAAGATGGAGGGAAGCTCTAAAACAAGTGGGGAGTATCTCTGGTTGGGATCTACGTGATAAGCCACAAGCTGCAGAGATTAAAAAGATTGTTCAAAAGATAATCAATATATTAGAGTGCAAGTCTTTAAGTGTTTCAAAAGATTTAGTTGGGATTGATTCTCCTATAAAAGCATTACAAAATCATTTGCTTTTGGACTCAGTTGATGGTGTTCGTGCTATAGGAATTTGTGGAATGGGAGGAATAGGGAAGACAACCCTTGCTACGGCTTTATATGACCAAATATCTCATCGATTTAGTGCATCATGTTTTATTGATGATGTAAGCAAAATTTATAGATTACATGATGGTCCACTCGAAGCACAAAAGCAAATCCTATTTCAAACTCTTGGCATAGAACACCATCAAATATGCAATCGTAACATGGCAACTGATTTGATACGACGTAGGCTACGTCGTGAGAAGGCCCTTCTGATTCTTGATAATGTTGATCAAGTTGAACAATTTGAAAAAATAGGTGTGCGTCGTGAATGGTTAGGTGCAGGTAGTATAGTTATTATCATTTCTAGAGATGAGCATATATTGAAAGTGTATGGAGTGGATGTAGTTTACAAAGTTCCACTTTTGAATCAGACAGAATCTTGCAAGTTGTTTTGTCGAAAAGCTTTCAAACTTGAGAAAACTATTATGAGTAATTATCGAAAGTTGGCATCTGATGTACTACGTTATGCTAATGGTCTACCACTAGCAATTACAATATTGAGCTCATTTTTGTTTGGTCGTAATGTAACTGAATGGAATGGTGCATTGGCTAGATTGAGAGAAGGTCCAGATAATGATGTTATGGATGTGCTGAGTTTAAGCTTTGATGTGCTAAAGGAGAGTGAAAAAGAAATATTTCTTGATATTGCTTGTTTTTTCAACGGTTATCACGAGAAATATGCTAAAAACATTTTAAATTGTTGTGGATTTCATGCTGATATTGGGTTAAGAGTTCTCATTGATAAATCACTTATAAGCATTGATTATTCAATGAGGATTGAAATGCATTCTCTGTTAGAAGAGCTAGGAAAAAAAATTGTGCAAGAAAATTCAAGCAAAGAGCAAAGAAAGTGGAGCAGGCTGTGGTCCAAAAAACAAATCTACAATGTTGTGATGGAGAATATGGAAAAGCATGTTGAAGCCATAGTTTTGGAATATGAAGATTATGATGAAGAGGAAGTTGAATACTTGTCAAAAATGAGTAATCTTAGATTGCTGATCATAAAGTGCGGTTGGCATATCTTAGAAAGCCCAAGTTGTCTTTCAAAGGAATTAAGATATGTTGACTGGCATATGTATCCTTTCATGTGTTTGCCATCAAATTTTCAGCCCAATCAACTTGTAGAATTGTTCTTGAAGAAGAGCAACATTAGACAACTATGGAAAAACAAGAAGTATCTTCCCAATCTGAGAAGATTGGATTTAAGTGATTCTAGAAAGCTAGAAAAGATAATAGATTTTGGAGAGTTCCCGAATCTTGAGTGGTTAAATTTGGAAGGATGCGTAAACCTTGTGGAGTTGGATTTATCTATTGGACTTTTAAGAAAGCTTGTTTACTTGAATGTAAAAGATTGTGAAAATCTGGTAAGCATACCCAACAACATATTCAGTCTTAGCTCTCTTCAAGATCTAAATTTGGGTGGTTGTTCCAAAGTGTTTAACAAGTATTCGTTGCCATCCTTGCATAGCTTATATTGTTTGCGTAGCATTGACATTAGCTATTGCCGTCTAAGCCATGTTCCTGATTCAATTGAATGTTTACATTCGCTAGAAAGATTAAATTTAGGGGGAAACTATTTTGTGACACTACCTAGCCTGAGGAAGCTTTCCAAACTTGTATATTTAAATTTGGAACACTGCAAGTTGTTGGAATCTTTGCCTCAACTTCCTTCCCCTACCACTATTGGGCGGGAACGAGATGAGAATGACGATGTCTGGATTTCAGGATTGGTCATTTTCAACTGTTCAAAATTGGGTGAGAGGGAACGTTGCAGGAGCATGACATTTTCATGGATGATACAATTCATTCAGGCAAACCTACAATCCTACCCAACCTACTTTGATAGGACTCAAATTGTAACTCCAGGAAGTGAAATACCAAGTTGGATCAACAATCAAAGTGTGGGTTATTCAATACAAATAGACGAATCTCCTATTATGCATGACAATAACAATAATATCATTGGATTTGTATGTTGTGCAGTATTTACCATGGCACCACGTCGTAGGCGGGTTCCATCGTCGACCATTATGGAACTAGTTTTACCTAAGAATTCCTATATGAATTTTTGGAGAATAAGTGTTCCAGTAATTCTCGATGGTGGTCTTATTACGACCAAATCAAGTCACCTATGGATAATCTACTTCCCTCGAGATTCCTATAATGAATTTGGAAGAATCTATTTTGACATTTTTGAGAGGGAAGGTCTGGGTATGAAGGTGAAGAGTTGTGGGTATCGTTGGGTATGTAAACAAGACCTACAATAG 2967 0.3627 MASSSNSSLALVTSSKKNYYDVFVTYRGEDTRNNLTDFLFDALESKGIMVFRDDINLQKGEYIGSELLRAIERSHVYVAVFSRNYASSTWCLQELEKICECIEGLEKHVLPIFYDVDPSEVRKQSGIYWEAFVKHEQRFQQDFQMVSRWREALKQVGSISGWDLRDKPQAAEIKKIVQKIINILECKSLSVSKDLVGIDSPIKALQNHLLLDSVDGVRAIGICGMGGIGKTTLATALYDQISHRFSASCFIDDVSKIYRLHDGPLEAQKQILFQTLGIEHHQICNRNMATDLIRRRLRREKALLILDNVDQVEQFEKIGVRREWLGAGSIVIIISRDEHILKVYGVDVVYKVPLLNQTESCKLFCRKAFKLEKTIMSNYRKLASDVLRYANGLPLAITILSSFLFGRNVTEWNGALARLREGPDNDVMDVLSLSFDVLKESEKEIFLDIACFFNGYHEKYAKNILNCCGFHADIGLRVLIDKSLISIDYSMRIEMHSLLEELGKKIVQENSSKEQRKWSRLWSKKQIYNVVMENMEKHVEAIVLEYEDYDEEEVEYLSKMSNLRLLIIKCGWHILESPSCLSKELRYVDWHMYPFMCLPSNFQPNQLVELFLKKSNIRQLWKNKKYLPNLRRLDLSDSRKLEKIIDFGEFPNLEWLNLEGCVNLVELDLSIGLLRKLVYLNVKDCENLVSIPNNIFSLSSLQDLNLGGCSKVFNKYSLPSLHSLYCLRSIDISYCRLSHVPDSIECLHSLERLNLGGNYFVTLPSLRKLSKLVYLNLEHCKLLESLPQLPSPTTIGRERDENDDVWISGLVIFNCSKLGERERCRSMTFSWMIQFIQANLQSYPTYFDRTQIVTPGSEIPSWINNQSVGYSIQIDESPIMHDNNNNIIGFVCCAVFTMAPRRRRVPSSTIMELVLPKNSYMNFWRISVPVILDGGLITTKSSHLWIIYFPRDSYNEFGRIYFDIFEREGLGMKVKSCGYRWVCKQDLQ* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g2320 988 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Mtr6g2320 988 Pfam C-JID domain 855 987 IPR045344 -
Mtr6g2320 988 Coils Coil 532 552 - -
Mtr6g2320 988 Pfam Leucine rich repeat 727 782 IPR001611 GO:0005515
Mtr6g2320 988 SUPERFAMILY L domain-like 551 794 - -
Mtr6g2320 988 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 162 IPR035897 -
Mtr6g2320 988 Gene3D - 354 439 IPR042197 -
Mtr6g2320 988 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 21 629 - -
Mtr6g2320 988 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 689 787 - -
Mtr6g2320 988 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 638 690 - -
Mtr6g2320 988 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Mtr6g2320 988 Gene3D - 1 157 IPR035897 -
Mtr6g2320 988 Gene3D Ribonuclease Inhibitor 717 830 IPR032675 -
Mtr6g2320 988 Gene3D Ribonuclease Inhibitor 491 716 IPR032675 -
Mtr6g2320 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
Mtr6g2320 988 ProSiteProfiles Leucine-rich repeat profile. 749 770 IPR001611 GO:0005515
Mtr6g2320 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 629 IPR044974 GO:0006952
Mtr6g2320 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 638 690 IPR044974 GO:0006952
Mtr6g2320 988 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 689 787 IPR044974 GO:0006952
Mtr6g2320 988 PRINTS Disease resistance protein signature 219 234 - -
Mtr6g2320 988 PRINTS Disease resistance protein signature 296 310 - -
Mtr6g2320 988 PRINTS Disease resistance protein signature 390 404 - -
Mtr6g2320 988 PRINTS Disease resistance protein signature 625 641 - -
Mtr6g2320 988 SMART till_3 19 159 IPR000157 GO:0007165
Mtr6g2320 988 Pfam NB-ARC domain 201 420 IPR002182 GO:0043531
Mtr6g2320 988 Pfam TIR domain 20 185 IPR000157 GO:0007165
Mtr6g2320 988 Gene3D - 165 348 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g2320 Mtr-Chr6 41087228 41091107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g2320 14 787 WRKY Transcription Factor Family AT4G12020 30.914 1.83e-83 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g2320 - - mtr:MTR_6g088245 1473.37